Basic Information

Insect: Phaonia tiefii
Gene Symbol: -
Assembly: GCA_963931995.1
Location: OZ008369.1:49268572-49272991[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0031 0.68 12.7 1.6 1 23 251 273 251 273 0.99

2 11 1e-06 0.00023 23.7 1.0 1 23 279 301 279 301 0.99

3 11 2.2e-05 0.0048 19.5 4.7 1 23 307 330 307 330 0.97

4 11 0.077 17 8.4 6.0 1 20 336 355 336 358 0.95

5 11 0.00012 0.026 17.2 4.4 1 23 364 386 364 386 0.99

6 11 0.00038 0.082 15.6 2.9 1 23 392 414 392 414 0.98

7 11 0.00038 0.082 15.6 2.5 1 23 422 445 422 445 0.98

8 11 0.00029 0.064 16.0 2.6 2 23 452 473 451 473 0.97

9 11 0.00046 0.1 15.4 1.3 1 23 479 501 479 501 0.98

10 11 0.00028 0.06 16.0 6.2 1 23 507 529 507 530 0.95

11 11 1.2e-06 0.00026 23.5 2.2 1 23 544 566 544 566 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0031	0.68	12.7	1.6	1	23	251	273	251	273	0.99
2	11	1e-06	0.00023	23.7	1.0	1	23	279	301	279	301	0.99
3	11	2.2e-05	0.0048	19.5	4.7	1	23	307	330	307	330	0.97
4	11	0.077	17	8.4	6.0	1	20	336	355	336	358	0.95
5	11	0.00012	0.026	17.2	4.4	1	23	364	386	364	386	0.99
6	11	0.00038	0.082	15.6	2.9	1	23	392	414	392	414	0.98
7	11	0.00038	0.082	15.6	2.5	1	23	422	445	422	445	0.98
8	11	0.00029	0.064	16.0	2.6	2	23	452	473	451	473	0.97
9	11	0.00046	0.1	15.4	1.3	1	23	479	501	479	501	0.98
10	11	0.00028	0.06	16.0	6.2	1	23	507	529	507	530	0.95
11	11	1.2e-06	0.00026	23.5	2.2	1	23	544	566	544	566	0.97

Sequence Information

Coding Sequence: ATGTCGGACAGCGACTCAGATATCGAGACATATTTAGTTGAGTTGGAAAAACATTTGGTAGATGACAAAGAAGAAATGGTTCTCTGTCGAGAACAATTTGTAGATAGCGGTAATTGTGGAGAGGATGTCGATAACAATGGTGGTAACGAAAATGAAAAGGACTTTCTAAATGATGATGACATCGATAATGATGAACTTGAAGGTGGTACCATATTTATGGATGCCGAGGGTAATTACTACTATCAGAGATGTAAAAAGGCAGTACCCGTCAAACCAGTTCAACCGCTAAAGAGCAAGCAGTGGTCGATTAAGGCATCGCAGATATCTTTAGCGGATGCTAAGAGAGAAAAATCTCTACCATCACCATGTCCGGCTAAATCAAAGGAAAAGCTAAAAAGTTCACAAAGCAAATATATCCCAACACCCAGTAAATCACCGCATAAACTTGGTCAAGCTTACAGCAAAAACCTACCCGATACAACTCCTACCAATACTGCAGTTTcctttaaatctgaaaataaattaGATAGCGATATTCAATTGGAGAAGTTTTCTTCAACATCAACAACTGTTCACGAAGAGACAATAACCTCAGAAAGTAGTAACGATGAAGAAATCTATGAATTTGAAGAAACGGAGCGAAACGTGGACCACCAAGTTTACCAAAATGAAACGAATGATAATAATGTTCCTAAAACGAAGGTTAAAGTCAAAGTTATGAGCCCCCCAAAATCAAATGCTTCGGGACAATATCAATGCTTGATGTGCTCATATAATACCGACACGAAATTGTTATTGTCGCGACACTTAAGAACTCATTTTGACGAACGTCCCTACAAGTGTTCCATGTGTGAAAAgggatttaaaaataatacattactAGAGAATCATATAAATACCCATTTGGGTAATAAGCCACATAAATGTGCGGATTGTGACAGGTCGTTTACAACAAACGGCGAATTGTCTCAACACCATAGAAAACGTCACTCTCTCATAAGACCGCATAAATGTAAGGAATGTGATTACAGTTGTGTAGAATTGGGTCAGCTGCGGAGCCACATGTATTGTCACACAAAAAAGCGGACCTATCAATGCCCCCACTGCACTTATATGGCACGGAACACATACAGACTGAAGCGTCACATGAGAACCCATACCGGCGAGAAGCCATACGAGTGCGACATATGTCATTCTCGTTTCACGCAATCgaattcattgaaatatcatcGGTTGATACATTCTGTGAATGACAAGCCCGTATTCCAATGTAATCTTTGTCCTACGACATGTGGTCGTAAAACTGATTTACGTTTGCACATCCAGAAGCAGCACAATACCGATAATCCAGTTACTTGCAAGCATTGCAGTAAAGTGCTACCGGATCGATATTCATATAAGACGCACATTAAGACACACGAAGGAGAGAAATGTTATCGCTGCGATGTCTGTACTTACGCTTCGACATCCCAAGGACACCTATATAGTCACATGCTTTTACATACCGATTCCAAGCCTTTTAGTTGTGAATTTTGCGAGCGAACCTTCCGTAAAAAACAACTACTTAACCATCATATAAAAGTCCATCATACGGAAAAGTATAAAGCACCTGCTCCCAGGAAAAAATCTCACATATGTCCCCATTGCGAACGATCATTTGCCTTCAAAGGTAATCTTATACGGCACATGGAAACCCATGATACAAACTCGCGGCATTTTGAGgagaaacaaaaattgaaattgggACGCATGAAACGAATCCTACCGGATGGAACGATAGTATCAAGAATCAAAACGCAAAGCGATGAAGAGGTAATCGACGAAGAAATCGAAGACAAAGAAAAAGAGGAATATGATGTAGAAAATAAAGACAATATCCCATATGTGCACGAAGAATATGTTGGTGATGAAGATGAACTAATTACAGGCGATGAACCAAAGATAATACTAACACAAGAAAGAGCTCCAATGGCAACATGTGCAAAGAAACCCGTTCAAAATGCAACTGCGCCATACACAACGGTATCGGTTAAAGAGGAGCATGATGAATTAAGGGAAGTAGTGGTTGATGACGGCCAGGGTTACATGCTGATAGAAGTTATGCTAGCAGAAGAAAAGAGAGAACAAACAACTTTCGCAGAAAAAGAGGAAAGTCCCAGGATGTATAAAACGTCGGTTGCAAaaTCATCTAATCCCAAAGCGTAG
Protein Sequence: MSDSDSDIETYLVELEKHLVDDKEEMVLCREQFVDSGNCGEDVDNNGGNENEKDFLNDDDIDNDELEGGTIFMDAEGNYYYQRCKKAVPVKPVQPLKSKQWSIKASQISLADAKREKSLPSPCPAKSKEKLKSSQSKYIPTPSKSPHKLGQAYSKNLPDTTPTNTAVSFKSENKLDSDIQLEKFSSTSTTVHEETITSESSNDEEIYEFEETERNVDHQVYQNETNDNNVPKTKVKVKVMSPPKSNASGQYQCLMCSYNTDTKLLLSRHLRTHFDERPYKCSMCEKGFKNNTLLENHINTHLGNKPHKCADCDRSFTTNGELSQHHRKRHSLIRPHKCKECDYSCVELGQLRSHMYCHTKKRTYQCPHCTYMARNTYRLKRHMRTHTGEKPYECDICHSRFTQSNSLKYHRLIHSVNDKPVFQCNLCPTTCGRKTDLRLHIQKQHNTDNPVTCKHCSKVLPDRYSYKTHIKTHEGEKCYRCDVCTYASTSQGHLYSHMLLHTDSKPFSCEFCERTFRKKQLLNHHIKVHHTEKYKAPAPRKKSHICPHCERSFAFKGNLIRHMETHDTNSRHFEEKQKLKLGRMKRILPDGTIVSRIKTQSDEEVIDEEIEDKEKEEYDVENKDNIPYVHEEYVGDEDELITGDEPKIILTQERAPMATCAKKPVQNATAPYTTVSVKEEHDELREVVVDDGQGYMLIEVMLAEEKREQTTFAEKEESPRMYKTSVAKSSNPKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -