Basic Information

Insect: Phaonia tiefii
Gene Symbol: -
Assembly: GCA_963931995.1
Location: OZ008368.1:65023874-65026594[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.007 1.5 11.6 5.6 1 23 118 141 118 141 0.95

2 14 2.6e-05 0.0057 19.3 5.1 1 23 147 170 147 170 0.97

3 14 0.012 2.6 10.9 4.4 1 23 181 204 181 204 0.96

4 14 7.4e-05 0.016 17.8 1.1 2 23 311 332 310 332 0.97

5 14 0.00048 0.1 15.3 3.5 1 23 338 360 338 360 0.93

6 14 0.023 5 10.0 0.5 1 23 373 395 373 395 0.98

7 14 0.074 16 8.4 6.3 1 20 403 422 403 424 0.94

8 14 0.00031 0.068 15.9 0.5 1 23 489 511 489 511 0.99

9 14 3.9e-06 0.00084 21.9 4.1 1 23 517 539 517 539 0.97

10 14 0.0044 0.95 12.3 7.6 1 23 545 567 545 567 0.99

11 14 9.5e-05 0.021 17.5 3.2 1 23 629 652 629 652 0.95

12 14 0.00016 0.034 16.8 1.4 1 23 658 680 658 680 0.99

13 14 4.4e-05 0.0095 18.6 0.6 2 23 688 709 688 709 0.97

14 14 4.4e-05 0.0095 18.6 3.4 1 23 715 738 715 738 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.007	1.5	11.6	5.6	1	23	118	141	118	141	0.95
2	14	2.6e-05	0.0057	19.3	5.1	1	23	147	170	147	170	0.97
3	14	0.012	2.6	10.9	4.4	1	23	181	204	181	204	0.96
4	14	7.4e-05	0.016	17.8	1.1	2	23	311	332	310	332	0.97
5	14	0.00048	0.1	15.3	3.5	1	23	338	360	338	360	0.93
6	14	0.023	5	10.0	0.5	1	23	373	395	373	395	0.98
7	14	0.074	16	8.4	6.3	1	20	403	422	403	424	0.94
8	14	0.00031	0.068	15.9	0.5	1	23	489	511	489	511	0.99
9	14	3.9e-06	0.00084	21.9	4.1	1	23	517	539	517	539	0.97
10	14	0.0044	0.95	12.3	7.6	1	23	545	567	545	567	0.99
11	14	9.5e-05	0.021	17.5	3.2	1	23	629	652	629	652	0.95
12	14	0.00016	0.034	16.8	1.4	1	23	658	680	658	680	0.99
13	14	4.4e-05	0.0095	18.6	0.6	2	23	688	709	688	709	0.97
14	14	4.4e-05	0.0095	18.6	3.4	1	23	715	738	715	738	0.97

Sequence Information

Coding Sequence: AtggataataattttataatatgtgGTGATTTTTCATTAAACGAcgattttttttacgattttgaacTATGTGGCGACAGCAGTTTTTTGTGGCAATTAGAAGCAGAAGGCCAAGAGTTCCTTCGAACTATCGCCACAGACTCGattgaaaatacagaaaattcaAATCAACCAAATTACAATGGAGACCGAGAGATCCTTCAAACCGTCATTTCGGAATCGAGTAAAACTATAGAAactccaaataatgaaacgcatGATGTATTATTACAAAAGTCTGATAATTATAGGCAACTATCACAGGTCAGCGTTTCACCAACAGCAACAAGGACAGAGGAAAATATAAAGGGCTTTGagTGTTCGTTGTGCGGGAAACACTTTGTACAAAAATCCTCCTGTAATCGTCATAATCGCGAGCAACATCTACAACCAGGGAGTTTTCATTGTAATAAATGTGGTTTAAGATTTTCTAAGAAATTCAATCTTCAAAACCATCAGAAACGTGCCCATTCCAAACAACTAAAGTATACAAATAATGGCTTTAAATGTCCACACTGTTCATGTATTTATACCAAAGAATCGGCAATTAAGAAACATATAAAAGATTATCATGAGAAAGTACAACTCTCACAAAGCGAAACCACAACCCAGTCGCTATCAGCTGAGGATAATGATCCTCAGCGCGAGgcagaaaatgttttaaaacagtTAATGCTTCTCCAAAATGATATTGAGGGAGCAAAtgcaaaatatacaaaacatactGCAGATGAATTAAGACAAACAACACCTGATACAATTGCAGAGATAACTTCTATAGATGAAACAATAGTGGAACAGGTGACCATACGCGATCGTCTGTATCCCTTTGGTGAGGTTAAAGAGCTAAAAGTGCAGCAAATCAAAAGAAACGATGGGATACCGTATTTAGTTTGCGAATACTGCAGCAAAGAGTTTCGAAAATCATATGGTTATTTAAGGCACCGTAGAATTCACACTCGAATTCGTCCTTTTATCTGTGTCGTATGCAAAAAATCATTTCCCACACAAAACCAATTGAAACGTCATTGTTCTACGCATAAATTGGTAAAGAACTTCGGAGTATTTAAACGCTGCTACAAATGTCCAAAATGTTTTGAGATTATctcaaatatttcacaatttgacAACCATTTAAGtTCCCACTTACCACATTCCGTAATTGTTTTCAAATGCCGAAAATGTAATAAATCATTTCAATCGTTAAACACATTCTTTCGTCACAAACACAAGGCGGATGATCCAGAATTAAACATGTTAAAGTCTCTACTGCCCTCTCCTTTATGTTTAGTAGACGGTGAAGAAACTTTAAGTGTATTCAATGACAAAACAAGCGGAAATTATCAGTGCTCCTTGTGCAGTTTGAAAATGTCATGTAGTATTTCTCTCAAACAGCATGAAAAACGTCATCGACATTTAAGAAACTATCAATGTTTCTTGTGTAATGGTTATTATGCTTCAAAGTCTTCTTTAGAAGTTCATATGAAAATTCATCTAAATCAGCGAAATTTCAAATGCAAAAGATGCAACAAAGTGTTTCGAACAAACTACCAACTCAAAAGACACGGATTAAGGCACACCAGCATAAAAAACTACAAATGTAGATACTGCAATCAAACCTTTAAAACCTCACAATATTGTCGTAGTCATATGATGACCCACCTCAAAAAGctgctaaaaacaaatattgaattgcaGCAACAAAAGGAAAATGTAGTCTCAGTACAAACATTAATAGAAAACAAAGATAAGACAGAAATAGTAATCACggaaatgcaaatttttaaaaacagtcgAAGCGAAAGCGGTAAGGTGTgctctaaaaatgaaaaaattaatttaccttACAAGTGTCTGAAATGTCCCCGACAATTTCGTTATAATTCCTGGCTAAAGAAACATATCGCTCACACACACTCCAATGAAAGACCCTTTAAATGTGACATTTGCCAAAAAGCTTTTCGTAAGAATCAAATCTTGAAGAATCATCTCTTAACGCATGACGACGTTAGGTCTAAAGAAACTTGTCTGGTCTGCGGCAAGAAATATGCCTCAAACAAATCGTTAAAAGTTCATTTACGACTACATACTGAAGAGAAACCATTCAACTGTGAAATATGCCAAAAATATTTTAGGACATCCGGTCATTTGATACAACATCGAAAATCAAATCATAAAGATGTTTCTGCATAA
Protein Sequence: MDNNFIICGDFSLNDDFFYDFELCGDSSFLWQLEAEGQEFLRTIATDSIENTENSNQPNYNGDREILQTVISESSKTIETPNNETHDVLLQKSDNYRQLSQVSVSPTATRTEENIKGFECSLCGKHFVQKSSCNRHNREQHLQPGSFHCNKCGLRFSKKFNLQNHQKRAHSKQLKYTNNGFKCPHCSCIYTKESAIKKHIKDYHEKVQLSQSETTTQSLSAEDNDPQREAENVLKQLMLLQNDIEGANAKYTKHTADELRQTTPDTIAEITSIDETIVEQVTIRDRLYPFGEVKELKVQQIKRNDGIPYLVCEYCSKEFRKSYGYLRHRRIHTRIRPFICVVCKKSFPTQNQLKRHCSTHKLVKNFGVFKRCYKCPKCFEIISNISQFDNHLSSHLPHSVIVFKCRKCNKSFQSLNTFFRHKHKADDPELNMLKSLLPSPLCLVDGEETLSVFNDKTSGNYQCSLCSLKMSCSISLKQHEKRHRHLRNYQCFLCNGYYASKSSLEVHMKIHLNQRNFKCKRCNKVFRTNYQLKRHGLRHTSIKNYKCRYCNQTFKTSQYCRSHMMTHLKKLLKTNIELQQQKENVVSVQTLIENKDKTEIVITEMQIFKNSRSESGKVCSKNEKINLPYKCLKCPRQFRYNSWLKKHIAHTHSNERPFKCDICQKAFRKNQILKNHLLTHDDVRSKETCLVCGKKYASNKSLKVHLRLHTEEKPFNCEICQKYFRTSGHLIQHRKSNHKDVSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -