Basic Information

Insect: Phaonia tiefii
Gene Symbol: -
Assembly: GCA_963931995.1
Location: OZ008370.1:189669441-189672354[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.026 5.7 9.8 0.3 2 23 255 277 254 277 0.92

2 16 1.9 4e+02 4.0 4.4 6 23 287 305 282 305 0.95

3 16 0.24 51 6.8 2.2 1 23 311 334 311 334 0.94

4 16 0.00078 0.17 14.6 0.1 1 23 341 363 341 363 0.96

5 16 8.4e-05 0.018 17.7 0.3 1 23 364 387 364 387 0.95

6 16 0.11 24 7.9 0.1 3 23 476 497 474 497 0.94

7 16 0.0024 0.52 13.1 0.2 1 23 531 554 531 554 0.94

8 16 0.00013 0.027 17.1 0.2 1 23 561 583 561 583 0.98

9 16 0.028 6 9.7 1.4 1 23 584 607 584 607 0.94

10 16 0.021 4.5 10.2 0.2 3 23 696 717 694 717 0.90

11 16 0.082 18 8.3 0.2 1 23 751 774 751 774 0.95

12 16 0.00022 0.048 16.4 0.1 1 23 781 803 781 803 0.96

13 16 1.1e-05 0.0023 20.5 0.7 1 23 804 827 804 827 0.97

14 16 0.0024 0.51 13.1 0.9 1 23 843 866 843 866 0.97

15 16 0.00035 0.076 15.7 3.6 1 23 872 894 872 894 0.98

16 16 2.3e-06 0.0005 22.6 3.3 1 23 900 923 900 923 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.026	5.7	9.8	0.3	2	23	255	277	254	277	0.92
2	16	1.9	4e+02	4.0	4.4	6	23	287	305	282	305	0.95
3	16	0.24	51	6.8	2.2	1	23	311	334	311	334	0.94
4	16	0.00078	0.17	14.6	0.1	1	23	341	363	341	363	0.96
5	16	8.4e-05	0.018	17.7	0.3	1	23	364	387	364	387	0.95
6	16	0.11	24	7.9	0.1	3	23	476	497	474	497	0.94
7	16	0.0024	0.52	13.1	0.2	1	23	531	554	531	554	0.94
8	16	0.00013	0.027	17.1	0.2	1	23	561	583	561	583	0.98
9	16	0.028	6	9.7	1.4	1	23	584	607	584	607	0.94
10	16	0.021	4.5	10.2	0.2	3	23	696	717	694	717	0.90
11	16	0.082	18	8.3	0.2	1	23	751	774	751	774	0.95
12	16	0.00022	0.048	16.4	0.1	1	23	781	803	781	803	0.96
13	16	1.1e-05	0.0023	20.5	0.7	1	23	804	827	804	827	0.97
14	16	0.0024	0.51	13.1	0.9	1	23	843	866	843	866	0.97
15	16	0.00035	0.076	15.7	3.6	1	23	872	894	872	894	0.98
16	16	2.3e-06	0.0005	22.6	3.3	1	23	900	923	900	923	0.97

Sequence Information

Coding Sequence: atgtccaCTTCTATAACGACAAGACTGCCAATAAAAGACAGCAACGTTTGTCGGTTGTGTCAAATACCTTGCAATGGACAACACAATTGTATCAATGACGATAATGCTCAAATGAATGAGGTCTACAGGATCACATTGAGATATTTCCCGGCAAAGTTTTTAGAACCTTCTTGGAGTAGCTCACAAGCAGCATTGTGTCTGGAGTGTTGGCGCCATATTATTGAGTTCTACAGCTTCCAGGAGTCGATATTTGAGACGCAAAAGAAACTCCTTGGACGGCAGCATGAGGTTGATATCGATATGAAAGACATTACTATTCTTCCTAGAAATGGCAGCGTCGATGTTACTTCGGGTGATATAGTTAATTGTGATGTTAAACCGAAATTGGAGTACAGCCCTGTGTCGTCAgacttaaaattgaaaaatgttgcatCATCTAACGAAAATGATCAAAATGTGGGAAAGGAAACTACCGATGTTAAAAATGATGATGGGGTGTTCATGGATGGTTTTACTATTGACATATCTTTGTCCGATCTGGAAGATATAgacattcaatttagttcagatGATGAAATGCCAGTGACCAAAAGTTTGGACACCCAGAAAGGGGTTGATCTAAAACCTGCGTTACAAAATCCTACACGAAACACGTCGCAATGCAATGTTTCCCTTGATTCTCTAACCTGTGATGGCAAAGAGAAAAAGTCGAAAGATAAGTCAAGCGTAGATGAAGATATTGATCACGGTAAGCCCAAACTCGAATGTTGGATATGTAATAAGTCTGTCGCAACCTTTAAGCTTCTGCAAGACCATTTTCAACTGAAACATAGGAGTGGACAGTGCTACACTGTTTGTTGTCAGAGCAAGTTTACCAGCAAGCATCAATTCGAGGAGCACTTACGCTCCAAGCATACCCACAACGAAGGTTTTAAGTGTGAAGAATGTAAAATTGAATGTTCAAGTTTATCCATCCTAGAAAAGCATAAACTTCAAAAACATCCGGAAATTGTACAAAACTTTAGATGTCCAGAATGCCCAATGATCTTGCCGACGAGCGATCAGTTGGAAAAACACTTCAATGCCCATTTCGCTTGCCAAGAATGCAGCAAAGTGTTTCGAACAACTGCTGGCCTAAAGTCCCATACACGAGCTGTTCATATTGCTGCTACAAAACGTTCAACGACGGCGGTGGGATTAAAAGCTGTTTTGGAATCTAGTTCAGACGGCGAAACACCAGTGAAGAAATGCCGAAAGGATTTTCAAGTAGAAGCTGCTTTACAAAATCCTACAAGAACCACATCGCAATGTAATGTTTCTCCAGATTCTCAAACTTGTGATGGCAAAGAGACAACGTCGAAAAATAATACAAGCGTAGGTGAGGATATTGATCAATTTATAGCCAGGTATAAACCAATATTAGACTGTTGGATATGTAGTAAGCCTGTCGCAACCTTTGCACTTTTGCAAAGCCATTTTCGTCTGAATCATAGGAGTGGACAATGCTACATTCTTTGTTGCCAACGCAAGCTAATCAGCAGGCATCAAATTGAGCAGCACATACGCTCCAAGCATACTCACAAGGAAGCTTTTATGTGTGAAGAATGTAAAATCGGATATCCAAGCGCATCTACCCTAGAAAAACATAAACTTCAAACACATCCGGAGATTGCACAACAGTTTAGTTGTCCGGAATGTCCTATGATTTTGTCGACAAGCAACCAGTTAGAAAAACACTACAATTCCCATTTCGTTTGCCAAGAGTGTAGCAAAGTGTTTCAGACAACCGAAGCCCTAAAGTGCCATACAGCAACGGTTCATATTGCTACCACAACTTCAACAACGGCTGCAGTTGGCTTAAATGATGTCTTACAACCTTATTCGGAGGATGAAATAGCAGTTAAGAAATGtcgtatggaatttaaaatagAATCTGCTTTACAGAATCCTATACGAACCACGGCGCCACACAAAGTTTTCCAAGAGCCTCAAACCAGCGATGCCGAAGAGAAAAAGTCAAAAGATTATACCAGCGTAGATGAGGATATTGATGAATTTATAGCCAAGCACAAACCAAAGCTAGACTGCTGGATATGTGATAAATCTGTTACAACCTTTGAACTTTTGCAAGACCATTTTAGTCTGAATCATGCCAGTGGGCAGTGCTACATTACTTGTTGCAAAAGGAAACTTAGTAACAGGCATCAAGTTGAGGAGCACATACGTTTCAAGCATATAGAAAAGAAAGGCTATATGTGTGAAGTATGTAAAATTGAATATCCGAAGGCATCCATCCTCAAAAAGCATCAAATTCAACGACATCCGGAAATTGTAGGAAACTTTAATTGCCCGGAATGCCCAATGATTTTGTCGACAAGTGACCAATTGGAAAAACACTACAACGCCCATTTCGTTTGCCAAGAGTGCAGCAAAGTGTTTAAAAGTACTGATGGCCTTAAGTCCCATACACGAATGGTTCATATTACTACCGAACAAACTGCAACGATGACGGGCAGCTCAAAAACTTTCACCTGCGAGCAATGTGGTAAAACTATAAACTCAAAAAGTATCTTTGAAAACCATCAACGTTACGCCCACAATGACGATtgtaaatacaaatgtaatatATGTGAGAAGGCATTTAAGAAAGTTCTACATTTCCGTGATCATATGAATTATCACTCAAGCGATAATTATTACCCCTGCCCGCATTGCTCAAAGAAGTTCCAGTATTGGTCTCACCTGGAATCGCATATGAAGTCGGCACATTTGAAAATGTGTTCCAAGAAGCATATGCTCCAGATTTTGTTAGCTGAACAGGCATTTGATGTGCAGCAAGGAAACTGA
Protein Sequence: MSTSITTRLPIKDSNVCRLCQIPCNGQHNCINDDNAQMNEVYRITLRYFPAKFLEPSWSSSQAALCLECWRHIIEFYSFQESIFETQKKLLGRQHEVDIDMKDITILPRNGSVDVTSGDIVNCDVKPKLEYSPVSSDLKLKNVASSNENDQNVGKETTDVKNDDGVFMDGFTIDISLSDLEDIDIQFSSDDEMPVTKSLDTQKGVDLKPALQNPTRNTSQCNVSLDSLTCDGKEKKSKDKSSVDEDIDHGKPKLECWICNKSVATFKLLQDHFQLKHRSGQCYTVCCQSKFTSKHQFEEHLRSKHTHNEGFKCEECKIECSSLSILEKHKLQKHPEIVQNFRCPECPMILPTSDQLEKHFNAHFACQECSKVFRTTAGLKSHTRAVHIAATKRSTTAVGLKAVLESSSDGETPVKKCRKDFQVEAALQNPTRTTSQCNVSPDSQTCDGKETTSKNNTSVGEDIDQFIARYKPILDCWICSKPVATFALLQSHFRLNHRSGQCYILCCQRKLISRHQIEQHIRSKHTHKEAFMCEECKIGYPSASTLEKHKLQTHPEIAQQFSCPECPMILSTSNQLEKHYNSHFVCQECSKVFQTTEALKCHTATVHIATTTSTTAAVGLNDVLQPYSEDEIAVKKCRMEFKIESALQNPIRTTAPHKVFQEPQTSDAEEKKSKDYTSVDEDIDEFIAKHKPKLDCWICDKSVTTFELLQDHFSLNHASGQCYITCCKRKLSNRHQVEEHIRFKHIEKKGYMCEVCKIEYPKASILKKHQIQRHPEIVGNFNCPECPMILSTSDQLEKHYNAHFVCQECSKVFKSTDGLKSHTRMVHITTEQTATMTGSSKTFTCEQCGKTINSKSIFENHQRYAHNDDCKYKCNICEKAFKKVLHFRDHMNYHSSDNYYPCPHCSKKFQYWSHLESHMKSAHLKMCSKKHMLQILLAEQAFDVQQGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -