Ptie042181.2
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- -
- Assembly
- GCA_963931995.1
- Location
- OZ008369.1:36831363-36833450[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5e-05 0.0054 19.3 2.6 2 23 257 278 256 278 0.97 2 13 0.00037 0.08 15.7 2.9 1 23 284 308 284 308 0.96 3 13 0.0065 1.4 11.7 0.5 1 23 315 340 315 340 0.91 4 13 0.001 0.23 14.2 4.6 1 23 346 371 346 371 0.96 5 13 0.01 2.2 11.1 0.1 1 23 382 404 382 404 0.96 6 13 0.0017 0.38 13.5 0.6 1 23 412 436 412 436 0.96 7 13 1.4e-07 3e-05 26.4 1.4 1 23 442 464 442 464 0.98 8 13 0.00065 0.14 14.9 1.4 2 23 471 493 470 493 0.92 9 13 0.014 3.1 10.7 3.4 1 23 499 521 499 521 0.97 10 13 0.006 1.3 11.8 0.7 1 23 541 563 541 563 0.92 11 13 1.2e-05 0.0025 20.4 2.6 1 23 569 591 569 591 0.97 12 13 0.00063 0.14 14.9 1.5 1 23 599 621 599 621 0.98 13 13 4.1e-05 0.0088 18.7 0.6 1 23 627 649 627 649 0.98
Sequence Information
- Coding Sequence
- ATGTTCGATATAACTAAATTTTGTAGAACTTGTATGTGCCAAGTCCTGGGTAATTGCGAAGTGAGTCTCAAAAGTTATAATATAAATGAATCTCTAGGCTTGGCGGAGAAGTTGGCGCAGTGCTCCAATCTAAAAGTGAATATTTGTGATGGATATCCTCCAAGGGTGTGTGAGATATGCTTTGATAAAATTTCAGATTTCTATGAGTTTCAACAAATGTGTCGTCACTCCTTGGAAAAGTTTGTAGTAATGCTAGAGGAACACAACCCAAAAGTTAAATACGTGTTTTCGGAAGAGATTTCAATCAACGAGAACAAAGGCATTGAGGATAATCAAATAGAGGTTAAATGTGAATATATTCTAGAGGACGATTCTGATCATGATCCCCTGCTGGGGATAACAAATGATGTTCAATTGGTAGAAGGAGTTGAGATTGAGAGGCTCGATTTAGATATAATAACAAGTTTTAATTCCAACGAAAGAGAAAGAGAGCTGGCTGTGGGCATTACTTCCGAGGAGGACATAGACGAgaagaaaagtaaaaaacaagACAACGCAAGAAAGGCCACCAAAAGAGAAAACAAATCTAGCGTTAATAAAGACAAGGAGAGAActgaaactaataaaaataaagcCAATTATGAGACCAACGCCTCTTCAAACGAAGAACATTCAGAAAGTTTATACGACGAGGAAGAGTCTCTTTCAGAAGATCCCGAATTATCGGACGAGGAGAAAACCAGCACAGCTATCTGTAAGAAACGCCTGCAGTGTAGCATCTGCCCGAAAAAATTTATCCTTAAACGTTGTCTCGAAAGTCATATGCGGACGCATCAAGGATTACTGGATCATCCATGTCCGCGAGAAAATTGTGGCCGCTCCTACAGGCGTTTATGCGATTTGCGACAACACCTAAGAGACCACGATGGTCTTCCGCGTGAATATCGCTGTGTTAGAGGAAGTTGCAATCGCAATTTTAGTCGCTATGGGGATTTGCTAAAACATCGCATTGAGGAACATGGCGCTCCTCAGTTTTATAAATGCAATATAAATAATTGCGGACAAGAGTTTAAAACCAATACATGTCTAAAAAGGCATAAGGAAAAGCGACACAGCAACGGACCACAGAAACCACCAGAGACCCATATGTGTGACACATGTGGTGCAGTTCTCCGATCTGCCGCTACACTTCGAATGCACGCACTGATCCATGTTGAGAGATCCCAATGGCCATATATTTGCGATATAGAAGGATGTTCCAAGAGATTTAGAATTCAACAACAATTAACAATACATAAAAACCGTCATGCTGGAATTAAGAATTACCCTTGTCCGCATTGCGATATGCGCTTTGTAACAAGCACAAATCTGAAAAATCACATTAACACTCATACATGGGAACGAACATGGTCGTGCGAGTTTTGTCCTAAAGTTTGCAACACTCCGGACTTGTTAAGGAAACACACTGAGAATAAACATGGCATAGTCAAACGTTACCCTTGCAATATTTGTCATCGCCACTTCAATACAGCAAATGCAAAGATGTATCATGAAATGACCCATGTGGGTGACAATGAAGAAACAACACTTGTTGGAGAGAAGCACGACCTGCTTAATCGTTTTCCATGCGACTACTGTGATCGCGCATTTGAGTCtcaatcaagaaaaaaatatcacGAGATGGCCCATACTGGCGAGAAACCGCATGTCTGTGAGGAATGCGGCAAGGGATTTAGAACGACAACTCTGCTAAAAACACATAAGAGGTCACATATGAAGGAGCTGCCCAGAGATTACGTTTGTTCGGTGTGTGATCGTGCTTTCTTTTCAGCCCAAAGCATGCGACATCATGAAATGAAACATACCAAAGAAAAGCCTTACAAATGTGAGGAATGTGGATTCTCATTCAGATGGCCGAATAATTTAGCAAGACATCGTAAACTGCATCTGAGGGACAAAAAATTGAGTGAAAATACGCAAGAAGACGAATGTATTGAGGCCTTGATGGAAGATGATTAA
- Protein Sequence
- MFDITKFCRTCMCQVLGNCEVSLKSYNINESLGLAEKLAQCSNLKVNICDGYPPRVCEICFDKISDFYEFQQMCRHSLEKFVVMLEEHNPKVKYVFSEEISINENKGIEDNQIEVKCEYILEDDSDHDPLLGITNDVQLVEGVEIERLDLDIITSFNSNERERELAVGITSEEDIDEKKSKKQDNARKATKRENKSSVNKDKERTETNKNKANYETNASSNEEHSESLYDEEESLSEDPELSDEEKTSTAICKKRLQCSICPKKFILKRCLESHMRTHQGLLDHPCPRENCGRSYRRLCDLRQHLRDHDGLPREYRCVRGSCNRNFSRYGDLLKHRIEEHGAPQFYKCNINNCGQEFKTNTCLKRHKEKRHSNGPQKPPETHMCDTCGAVLRSAATLRMHALIHVERSQWPYICDIEGCSKRFRIQQQLTIHKNRHAGIKNYPCPHCDMRFVTSTNLKNHINTHTWERTWSCEFCPKVCNTPDLLRKHTENKHGIVKRYPCNICHRHFNTANAKMYHEMTHVGDNEETTLVGEKHDLLNRFPCDYCDRAFESQSRKKYHEMAHTGEKPHVCEECGKGFRTTTLLKTHKRSHMKELPRDYVCSVCDRAFFSAQSMRHHEMKHTKEKPYKCEECGFSFRWPNNLARHRKLHLRDKKLSENTQEDECIEALMEDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -