Ptie016239.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phaonia tiefii
Gene Symbol
-
Assembly
GCA_963931995.1
Location
OZ008367.1:300483710-300495182[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.18 38 7.2 1.7 1 23 214 237 214 237 0.96
2 22 2.1 4.6e+02 3.8 0.2 6 23 246 263 246 263 0.97
3 22 0.012 2.7 10.9 2.6 1 23 269 292 269 292 0.96
4 22 1.4 3e+02 4.4 1.5 1 23 297 319 297 319 0.87
5 22 0.051 11 8.9 0.2 1 23 435 458 435 458 0.91
6 22 0.19 42 7.1 1.0 6 23 468 485 468 485 0.99
7 22 0.0001 0.023 17.4 4.5 1 23 491 514 491 514 0.97
8 22 0.0024 0.53 13.1 0.3 1 23 519 542 519 542 0.94
9 22 0.23 50 6.9 0.8 1 23 669 695 669 695 0.96
10 22 0.16 34 7.4 0.7 6 23 704 721 704 721 0.98
11 22 0.0023 0.51 13.1 2.1 1 23 727 749 727 749 0.97
12 22 0.0094 2 11.2 1.8 2 23 755 776 754 776 0.97
13 22 1.5 3.2e+02 4.3 0.0 3 23 851 875 849 875 0.89
14 22 0.13 29 7.6 0.5 6 23 884 901 884 901 0.95
15 22 0.018 4 10.3 3.5 1 23 907 930 907 930 0.93
16 22 1.8e-05 0.0039 19.8 1.5 1 23 935 957 935 957 0.99
17 22 3.2e-05 0.007 19.0 3.2 1 23 965 988 965 988 0.98
18 22 0.00037 0.079 15.7 0.3 3 23 996 1017 995 1017 0.98
19 22 0.0052 1.1 12.0 0.1 1 23 1026 1049 1026 1049 0.98
20 22 5.5e-05 0.012 18.3 0.8 1 23 1057 1080 1057 1080 0.98
21 22 0.00029 0.063 16.0 0.3 1 23 1086 1108 1086 1108 0.97
22 22 0.014 3 10.7 6.3 1 23 1114 1137 1114 1137 0.98

Sequence Information

Coding Sequence
ATGACGGAAATTGAATGTTTCCTGTGTTTAGAAGCAAAGAAAGAGTTGGTGAACTGTATAAAGATCGGGTCCTCAGAATGGAACAAACAACATGTGAAGCGTATAATTGAGGATCATATGTGGCCCATGACTTCCATCAAATCCAAATCTCCATGGCTTTGTTCCACATGTTGggaaaaattatatgattttcatgATTTCTATAAACGGATAAGGGACTCTCATGACTACTATAATTATTTACTAAAATTCGAAACTGATATGGATATCGATGACAACGAAGTAAATGATTTTTTACCAGATGTAATGGGTAGACCGCCTGATGGACAATCAGATGAGTCCAATATATCCATGGAAAAGAATAGTCATAAAAACGTAGATGACGATGTACTTTCCTTACATTCTCGAGACGTGTTGGCAAATTCAGAAATTAAAGTGAATATAATAACGAACCAATTGGATGTTGTACAGCCCGAAACAGTTATTATAAATGACACTGTGCCAGAAGATCATTCTCCTCAATTACACACAGATAACAAGGATGAACAAATGGAAAATCCTCTTGAATTTTCTACAACAAATGCTGATGACGCGGCTACAAAAGAACTTCGTAAACAGTTCTTAGCTAAATATTATAGATTTACGTGTAATATCTGCCAAGACCCATGCACGACATTCGCCATGCTTCAACAGCATTTTCGAGAAGAACATGATCAAGAGGCCTACATGATATGTTGTGGCAAAAAATATAGAAATCGCAATGTATTTGGTGATCACATCAAACTTCACTTGGATCCTGattgttttaaatgtaaattcTGCCTTAAAATCCTAAAGAACAAACGTAATCTCGTCCACCACGTAGCTAGATGGCACGAGGAATACATATTCCGCTGCAGTTTATGCAATAGGAAATTCTTGGAAGAATCTAAATATGAGGAACACAAATCGGAACACAAGGAAATGCTACTGGCCAGCGGCAATGAAGGGGAAGATaatgaaaacgatgatgatgattattTACCGACAGCAGATAAGAGGGCACCCAGTTCCTGTTATTCTGAAGTGGAAAATGAGATTGAAAGTACTACATTGGCGATAAGTTCAATAAATAACACTGAATCTTTTCAAGAGCCAAACGAAAATCGGGAAGATGACCATTTTATAGAATGTTTATCAACTGACAGTGAAAATTTCAATGAAACTAAaggagaaaataaagtaaatacagCCAAATCAGAGGAGCAACATCAAACCAGAAATCAGTTAACCATACAAGGATATCTGAGTAAAACTTCGAAATTTAAATGCGATATATGTCAGGAGCCTACAGATTCCTTCGGGGACCTTCAACAACATTTCTCGGAAGATCATGCTGACCAAAAGCCATATGTCATCTGCTGTGGTGCGAAGTTTAGAAGCCGCTATTGTTTGAGTGAGCACGTTAAATCCCACATAATTCCAGACTGTTATAAGTGTCAGTACTGTCACAAagtccttaaaaataaaagaaactttaagTCTCACATTATAAGATGGCACGAAGAGAAAACATTCGCCTGTGCTATATGCGAAAAGAGATTTGTTTACAAATCTGAGTACGCAGAACACAAATCTGTGAGTCATTTGTCAGagacgaaattttttgaaaaggatGGAgagatttattatacaaaatctGCAGAAAAAAAGACTGGAAATGAAGGCGCTGCTTGTTCCAATACATTTTCTCCCACAGCTGAAATGGAAGAAGACTTCGAAGAAGATGTTgcaaatgaaaatgaaagtgaACTAAGTACATTAAAAGACACCAATATAAGTGAAGATGACAATAGGCTTCATATAACAAAGGATCAAAACTTTAAAATGTCTCTAGAAATTACCTTGGATGACGGCGAGACTTCCCTAGAAGAATGTGCAGAAATTGAAGAGAGTCCATCAGAAAAGAAAACCACTCCCCTAGTAATGATGCAATTTGACAAATTCCTAAAAAAGCATCACAAATTCACCTGTCATATATGTGATAACCCAGATGAGACTTATGAGAATTTTGTCATGCTTCGTCAACATTTTAATACAGCGCATAAAATAGAGGGCTACGTATTTTGCTGTGGTGCCAAATTTAAAAGACGCCGTTGTTTGGTAGATCATATTAAAGGTCACTTGGATCCAAATTATTTCAAGTGTACTTACTGTTCTAGAGTCTTAAGAGGTCGAAGGAGTCTTCAGCATCACATAGCATTACATGAGGGGAACATCAAACGTTGCAAAGTTTGCAATAGGAAATTTTTTGAtgcaattaaatatgaaaatcatACTTTAACGCATATTCAAACGAAAAACGCCGTTGAAAACGATGATAAAGATGCCAACCTTATAGAAAATAGCGACGATAGTGACGATGATATTCCTTTAATATATAGCATAGTGCGACGTGAAGCAAAACAAGCAGAGGAAGCAGAGAGCTCACAATTGGGCCCTGACTATAGTAAGAACCTTCAAAGACAATTGGAACACGATGAATTTCTggctcaacattttaaaattatctgCCCCATATGTGAAGACCCGATTAAGTCATTCGAAACATTCGCTTTGCTACGAGAACATTTTGTCTCAGATCATGAAGAGGATCCCTACCTGATATGCTGTGccatgaagtttaaaaaacgtgATACCCTGGTGCAACATATTAAAACTCACTTGAACCCAGatgattttaaatgtaaattctgTTCGAAAATCCTTAAAAGTAAACGAAATCTCTTGTACCACATAGCAGCATGTCACGAGGGTAAACAGTTTCGCTGCGATATATGTGACAAGAAATTTGTTGAGGAATCAAGTTACAAATATCACATAAAGACCCATAAGCCAAATGATAATCCGCATTTTCCATGTCCAGAATGTGGTAGATCTTATAAAATCAAACACAAACTTACCCATCATATAAATACTTCTCATCGTCATCGATATGCTAGACTTTGTGACATTTGTGGTATTTATTTTCGCGATTCCAACCTTTATAGTGCCCACATGAAGACAAAACACGTTGAAAGTGGTGAAAAAGAATCATACCCCTGTGATATTTGTGGACGCATTTTGGCAGCAAGGGCAAGTTTAAGACTTCACAAGAAGACACAACATCCAGAAAATGGTACATTTTCATATACCTGTCACATATGTTCGAAACCTGTTGCAACAAAGGGCCTATTGAATTATCATATACGTATGACACACAAAAAGATTAGGCCACACAAATGTGCTGTATGCGGAAAGGCTTATAAAGAAGCGAAACAGCTAAGGGGACATATGGGTATTCACACTGGCGATTCTTTATATAAGTGCAACTTTTGTCCGAAAACATTTAACTCCACTGGCAATCGTTCAACTCATCGCAAAAAATGCCATCCAAAGGAATGGAAAGAATGGAACAGTAATCTTTATGttaaaaatacaacaacacaAAATTCGACGAAAAAAAGCTGA
Protein Sequence
MTEIECFLCLEAKKELVNCIKIGSSEWNKQHVKRIIEDHMWPMTSIKSKSPWLCSTCWEKLYDFHDFYKRIRDSHDYYNYLLKFETDMDIDDNEVNDFLPDVMGRPPDGQSDESNISMEKNSHKNVDDDVLSLHSRDVLANSEIKVNIITNQLDVVQPETVIINDTVPEDHSPQLHTDNKDEQMENPLEFSTTNADDAATKELRKQFLAKYYRFTCNICQDPCTTFAMLQQHFREEHDQEAYMICCGKKYRNRNVFGDHIKLHLDPDCFKCKFCLKILKNKRNLVHHVARWHEEYIFRCSLCNRKFLEESKYEEHKSEHKEMLLASGNEGEDNENDDDDYLPTADKRAPSSCYSEVENEIESTTLAISSINNTESFQEPNENREDDHFIECLSTDSENFNETKGENKVNTAKSEEQHQTRNQLTIQGYLSKTSKFKCDICQEPTDSFGDLQQHFSEDHADQKPYVICCGAKFRSRYCLSEHVKSHIIPDCYKCQYCHKVLKNKRNFKSHIIRWHEEKTFACAICEKRFVYKSEYAEHKSVSHLSETKFFEKDGEIYYTKSAEKKTGNEGAACSNTFSPTAEMEEDFEEDVANENESELSTLKDTNISEDDNRLHITKDQNFKMSLEITLDDGETSLEECAEIEESPSEKKTTPLVMMQFDKFLKKHHKFTCHICDNPDETYENFVMLRQHFNTAHKIEGYVFCCGAKFKRRRCLVDHIKGHLDPNYFKCTYCSRVLRGRRSLQHHIALHEGNIKRCKVCNRKFFDAIKYENHTLTHIQTKNAVENDDKDANLIENSDDSDDDIPLIYSIVRREAKQAEEAESSQLGPDYSKNLQRQLEHDEFLAQHFKIICPICEDPIKSFETFALLREHFVSDHEEDPYLICCAMKFKKRDTLVQHIKTHLNPDDFKCKFCSKILKSKRNLLYHIAACHEGKQFRCDICDKKFVEESSYKYHIKTHKPNDNPHFPCPECGRSYKIKHKLTHHINTSHRHRYARLCDICGIYFRDSNLYSAHMKTKHVESGEKESYPCDICGRILAARASLRLHKKTQHPENGTFSYTCHICSKPVATKGLLNYHIRMTHKKIRPHKCAVCGKAYKEAKQLRGHMGIHTGDSLYKCNFCPKTFNSTGNRSTHRKKCHPKEWKEWNSNLYVKNTTTQNSTKKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-