Ptie006011.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phaonia tiefii
Gene Symbol
-
Assembly
GCA_963931995.1
Location
OZ008367.1:148667490-148673091[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00026 0.056 16.1 5.0 2 23 129 150 128 150 0.98
2 9 1e-06 0.00022 23.7 3.1 1 23 156 178 156 178 0.99
3 9 4.7e-07 0.0001 24.8 1.2 1 23 184 206 184 206 0.99
4 9 2.4e-06 0.00053 22.5 3.6 1 23 298 320 298 320 0.99
5 9 1.1e-05 0.0023 20.5 0.5 1 23 326 348 326 348 0.98
6 9 9.6e-05 0.021 17.5 4.8 1 23 354 376 354 376 0.98
7 9 1.8e-06 0.0004 22.9 1.0 1 23 486 508 486 508 0.98
8 9 5e-05 0.011 18.4 1.3 1 23 514 536 514 536 0.99
9 9 1.6e-07 3.5e-05 26.2 1.4 1 23 542 564 542 564 0.98

Sequence Information

Coding Sequence
ATGCACCTCAACCACGCTACAGCAGTAAGTACGGCCGCTATGATCAATTATCAACACTATGCACCAGCCCAAATTACAACTTCACATGGGCTTACCAGTTCGACGGGTGGTCACCAGCAGACGTCGATTGCTGCAGCCGGACTGCAGCAGGCCCCCTTTACGTTGCACCAGCTGACAGCGGTACAAGCCATACAGCATCCTACTCACCAGGCCATGTTGCATCCGCAGCATCCGTTGGTTCACTTGCTGGACATTTCAACAACGGCGGCCAGCCAATCGAATATTCACAATAATCCGGCACCGATAACGCCAATGCCAGTGACTAAAATCGAAATTCCAGAGGAAATCAATGAACCCATAATCGACGATCCGCGCAAAAAGAAACAGTGCCACATTTGTAAAAACAAGTTCCGACAACTGACTACTCTGAGGAATCACATGAAGATCCATACCGATGAAAGACCCTATAAATGTAAGCATTGCGATAAGGCCTTCCGTCAGATATCGACACTGACAAATCATGTCAAGATTCACACTGGTGAAAAACCATTTAAATGCAATATTTGTGCTAAGGACTTTCGCCAACAGTCGACCTTAATTAATCACATTAAAACGCATAAGGTTTTCGCTTCACTTGCAGAATCAAATAATGCACCGGCGGCTCTGTTAAACTTTCAACCACCACCACCGCAGGGTACTTCACGAAAAGGACATTCGAAAGCAGCTGCACATGCTGCTGCGGCACAATTAatacatcaacaacaacagcagcagcaacaacaacacggGCAAAGTACAATAACATATACACCTcaacaaacaaaacatataaCCAAGAGTCTTTATACAGGCAGTTACAATTCACCACAGGCGGACGAGCTGGTCAAACCGTTTCAGTGTCATATCTGTAAGCGAAGGTTCCCTCAACTAAGTACCCTGCAGAATCACGAGCGCACCCATATTGATCCGAAACCTTACAAATGTGATTCATGCGATAAGGCATTCAGTCAATTGGCCACGCTGGCCAATCACAAGAAGATCCATTCGGGCGACAAGCCGTACGCTTGCTCGTACTGCTGCATGACGTTCCGACAGCAGAGCACGCTGAACAACCACATGAAGACGCATGCCAATCAAGTGGCCACCATAACATCGAACAACCAAACGGGGGCAATTATACATCATGGCACAGgaggaggaggaggaaacCACGCTGGTAATAATAACATCCCTTTAGCAGCAGCTACCATCATGGTTACGCCCACAGCTTCAGGACATTTGCAAATACAGCCCCAAGTAGAACACCATCCCTTGCTCCATTTTCTCGATAGCAATACCACCGTCAGCACCCTAAGTAATAAGGAGCAACAGTTTGCTTCGTCCCAACAAAATAATGGTACTACAACAACTGGAGTCATAGCCCATTGTATACGTAACAGTTGTCCAGATCGTCCATTCATGTGTAGTGTTTGTCGTCGGGCATTCTCACAACAGAGCACTCTCGCCAATCACTTGAAGACCCACACGGGCGAGAAACCCTACAAATGCAAAATTTGCGAAAGTAACTTCCGACAAGTGTCTACACTTAATAATCACTTGAAAATTCACACTGGTGAAAAGCCCTATGTTTGTTCCTATTGTCCTAAACAATTTAGACAAAAAAGTACACTTACTAATCATGTGCGCATTCATACTGGTTGA
Protein Sequence
MHLNHATAVSTAAMINYQHYAPAQITTSHGLTSSTGGHQQTSIAAAGLQQAPFTLHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTAASQSNIHNNPAPITPMPVTKIEIPEEINEPIIDDPRKKKQCHICKNKFRQLTTLRNHMKIHTDERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFKCNICAKDFRQQSTLINHIKTHKVFASLAESNNAPAALLNFQPPPPQGTSRKGHSKAAAHAAAAQLIHQQQQQQQQQHGQSTITYTPQQTKHITKSLYTGSYNSPQADELVKPFQCHICKRRFPQLSTLQNHERTHIDPKPYKCDSCDKAFSQLATLANHKKIHSGDKPYACSYCCMTFRQQSTLNNHMKTHANQVATITSNNQTGAIIHHGTGGGGGNHAGNNNIPLAAATIMVTPTASGHLQIQPQVEHHPLLHFLDSNTTVSTLSNKEQQFASSQQNNGTTTTGVIAHCIRNSCPDRPFMCSVCRRAFSQQSTLANHLKTHTGEKPYKCKICESNFRQVSTLNNHLKIHTGEKPYVCSYCPKQFRQKSTLTNHVRIHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00350334;
90% Identity
iTF_00817681;
80% Identity
-