Ptie058035.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- -
- Assembly
- GCA_963931995.1
- Location
- OZ008370.1:2137084-2140269[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.025 5.4 9.9 1.1 1 23 121 144 121 144 0.97 2 13 0.00016 0.034 16.8 1.6 2 23 150 172 149 172 0.97 3 13 3.4e-05 0.0074 18.9 3.2 1 23 181 204 181 204 0.95 4 13 4.9e-06 0.0011 21.6 4.7 2 23 453 474 453 474 0.98 5 13 1.6e-05 0.0035 19.9 4.4 1 23 480 503 480 503 0.96 6 13 0.00013 0.028 17.1 1.5 1 23 508 531 508 531 0.98 7 13 6.7e-05 0.014 18.0 1.4 3 23 544 564 542 564 0.96 8 13 0.00032 0.07 15.8 3.2 1 23 569 592 569 592 0.97 9 13 4.7e-05 0.01 18.5 0.8 1 23 598 620 598 620 0.96 10 13 0.00014 0.031 16.9 1.9 1 23 626 648 626 648 0.98 11 13 7.4e-07 0.00016 24.1 1.6 3 23 656 676 655 676 0.99 12 13 5.2e-07 0.00011 24.6 0.3 1 23 682 704 682 704 0.99 13 13 0.00022 0.048 16.3 0.1 1 23 709 732 709 732 0.98
Sequence Information
- Coding Sequence
- ATGGACGTCGATGGAAGTTCTGATCAGAAGTCTATGTGCCGAATATGCATGCAGGACAGTATTAATTTATATCCTATATTTGACAAAGTGCAATTGGACGACAGCGGCACCAATACCATAGCTGATATTATAACAGAATGCACCAGATATCCTGTACTATACAATGATAAATTACCCACGAAAATATGCAGTCCTTGCATGGATGCAGCTCGCAGTGCCCATACGTTTAAGCGACAGACAGAACAGGCGTATTGTCGCCTTAAGGCGCTGTATGATATAACCTGGATACCCAAGAAGGAGAAGGGTACATCGCCCACCTCCTTTGTAGATAGGTATACACAAACTGAGAAAAGTTCTGTGTTCCAGTGTGAGTCTTGCCCTCAAAAATTCTTTGCCGAAAATGAATTAAGACAGCATCGGACCACCTCTCATATATACGATGGGAAAAAGTGTAGGGTCTGTGGGGAGAAATTCAACCATTTGGGTCAATTGAAGGTACATTTGTCCACCGAGCATCCCAACGAAGGTATACGCTGTGACTTTAAGTGTCAAGTGTGTTTAAGAGAGTTTACGAGAAAGGACCATCTGAAACGTCACTTGGTAAAAGTTCATAAAATTGAGGATTTGAAATTGAATATTACTAAAGTATCTCTGGATGAGCCAGAAATCCACATCGATAATTCAGCTAACGTGTCAACTGGTCTTAATAATTATAGCAGCCATTGGCCTGACTATCAAGAGGAAGAAAGCGAGGCTCCCGAACATGTAACATCACCACAAAATGATAACGTCACAGCTACAAATCCCTTCTCTAGCGATGAGGGCGATACAACAGACCATCATGATTTCAGTGAAATGGATGAAGAAGATGTGAAGCAGTTTGTTGAGACTTTAACACACCCGGAGATATCAATAAAAGTTGAACGACCCGACTGCAATGATAACAATTCACCcgaaaagaaaccaaaatccgACGATGAAGAATTTTTGGAGGAGCCGAGCGTTAAGCTCGCTGCACTTAAACCGGAGAAaaatgaagaatattttgaagCTGATCCAGATGCTGAAACCGAAACAGAAGCATATGACGGCAATGATAATTTTCAGGATACAACATTGGAAGATGAACATCACAGTGGCGATCAAACAAGTGAAGATGACGCGTTACAAAACACCGACGCCGAAGATGAGGAGGAAGAAGAACATGATGAATTTAAATCTTCCCCAACATCGGCAGATGAAAAATGCAGCGAAAAGCAAAATAAAACACGCAAACAAAACCCCATATGTTCCTCTAAGCCCACAAAAGTTAAAGCACCCAGGCGGCGTCATGGTTCCTCCAAAACAGAAGACAATCGTTGCAAAGAATGCAACCGATCATTTTCACGCTACAATCATTTGCTACGGCACATGCTCACTCACAGTGACGAAAAGCCCCACATATGCAAGTTTTGTAGCAAGGGATTCTCCCGATCCGATCACCTGCAAAAACACATACAAAGTATACACTGCGAGAAAAACTTTAAATGTGATCAATGCGACAGCGCCTACGGACGCAAAGATCATTTGCTGCGTCACATTGAAACGCGACATAACAAAAATCCCGCCGCTCCAAAACCACAATTCGGGTGCGATATGTGCGACAAAAAGTTTACCACCAAAACATATTTGGCGAGGCATAAACTTTTGCACACGGATCGTCTGTACGCCTGCAAACACTGTTCCGAAACGTTCACAGAGAAGGAACAAATGAAGGATCACCAGAAAAAGGAACACTCTCAACCTCGCAACTTTCTGTGTAGCATTTGTGGCGATAGTTTTCAACGTAACGAATATCTTAAGATACACATGCGCCGTCACACGGGAGAGAAACCCTACAAGTGTCGATTTTGTGAAAAAGGTTTTCCTAGAAGTACAGATTTAAAAATGCACGAAAGATATCATATTGGGCTCAAACCAAATCTTTGCAACTTATGTGGGAAAGGTTTCCACAGGCCCTATAACCTCACCATTCACATGCGTACCCACACCGGCGAGAAGCCATACAAATGCAATCAATGTCCGCAAGCATTTGCCCAAAGCAATGATTTGAAAGCCCATATACGTCGTCATACCGGAGAGCGATTTCGTTGTGATATGTGTGGTGCTGCGTTTTTACAACGTTATGGCTTAAATGCTCACCTGCGAACAGTTCATGGTATTGTAGTTACTTCATTCACAGGACGGCTGCGTAAAACTGACCAATCTGCAGAAGGAAGTGAACCGCAGCAGGCTGTTATGGCTGCAGATCAAGCAGCAGTAGCCGATGACTCCCCGCCGTCCTTGTTTTTAGGTCAGCAACATCTTATAAATCCCGCGACGACATCAACAACGTCCACAGATGCAACACATTCACTTCCACACCATCCTCCACCATAA
- Protein Sequence
- MDVDGSSDQKSMCRICMQDSINLYPIFDKVQLDDSGTNTIADIITECTRYPVLYNDKLPTKICSPCMDAARSAHTFKRQTEQAYCRLKALYDITWIPKKEKGTSPTSFVDRYTQTEKSSVFQCESCPQKFFAENELRQHRTTSHIYDGKKCRVCGEKFNHLGQLKVHLSTEHPNEGIRCDFKCQVCLREFTRKDHLKRHLVKVHKIEDLKLNITKVSLDEPEIHIDNSANVSTGLNNYSSHWPDYQEEESEAPEHVTSPQNDNVTATNPFSSDEGDTTDHHDFSEMDEEDVKQFVETLTHPEISIKVERPDCNDNNSPEKKPKSDDEEFLEEPSVKLAALKPEKNEEYFEADPDAETETEAYDGNDNFQDTTLEDEHHSGDQTSEDDALQNTDAEDEEEEEHDEFKSSPTSADEKCSEKQNKTRKQNPICSSKPTKVKAPRRRHGSSKTEDNRCKECNRSFSRYNHLLRHMLTHSDEKPHICKFCSKGFSRSDHLQKHIQSIHCEKNFKCDQCDSAYGRKDHLLRHIETRHNKNPAAPKPQFGCDMCDKKFTTKTYLARHKLLHTDRLYACKHCSETFTEKEQMKDHQKKEHSQPRNFLCSICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGLKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDMCGAAFLQRYGLNAHLRTVHGIVVTSFTGRLRKTDQSAEGSEPQQAVMAADQAAVADDSPPSLFLGQQHLINPATTSTTSTDATHSLPHHPPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -