Ptie058230.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phaonia tiefii
Gene Symbol
-
Assembly
GCA_963931995.1
Location
OZ008370.1:6004884-6008949[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.8e-06 0.0017 20.9 0.1 2 23 190 211 189 211 0.93
2 15 0.00027 0.059 16.1 0.3 1 23 217 239 217 239 0.98
3 15 0.0024 0.52 13.1 0.6 1 23 252 274 252 274 0.98
4 15 7.4e-05 0.016 17.8 0.2 1 23 404 426 404 426 0.96
5 15 0.0014 0.3 13.8 1.0 1 23 432 454 432 454 0.95
6 15 3.1e-05 0.0068 19.0 0.9 1 23 471 493 471 493 0.98
7 15 0.058 13 8.8 2.8 1 23 502 525 502 525 0.95
8 15 0.0016 0.34 13.7 5.2 1 23 531 553 531 553 0.98
9 15 0.00019 0.042 16.5 0.4 2 23 560 581 559 581 0.97
10 15 3.6e-08 7.7e-06 28.3 1.8 1 23 587 609 587 609 0.96
11 15 0.00019 0.04 16.6 1.9 1 23 615 637 615 637 0.99
12 15 0.00022 0.047 16.4 1.7 1 23 643 665 643 665 0.94
13 15 1.5e-06 0.00032 23.2 2.4 1 23 671 693 671 693 0.99
14 15 2.3e-06 0.0005 22.6 0.7 1 23 699 721 699 721 0.99
15 15 0.0036 0.79 12.5 0.7 1 23 727 749 727 749 0.96

Sequence Information

Coding Sequence
ATGTCTGCTCCCATTGAAGCATCAAAATGCCGCACTTGCTTGCAAGATTGTTCCCGATATCAGCAACTTGAGGAATATGTCGAGAAAAGCTGTAAAATCATTGATATGTTAGACGAAATTGTCCCCCAAATTCACATTCGTATTCCCAGTCTGTTCTCCCATTTGGTATGTGGCATATGTGCGGATAAACTACTTAATAGTTATAAGTTCCAACAGTTGTGTCTTGAGACCAATAAACGACTGCATGCCATGTTAGCAAATAATGATGCACGTCCTGCGGAAAAAGAGACACAGCTGGAGGATCCTTTTACGGGAGTAGAAATGAAACAAGAGCTGAATGTTGATACAAATTATGAGTGCGAAATACATCCAGAAGTAAATCTAGAATCAAAAGATGATTGGAAGAATGATAATGGTGGGGATTGCGGTGACGCTGGAGGGAATGACAGAGACACTGATTCAAGCAATGAAAAGCTTTCCATCTTAAGAGATCGCAAACTAAACAAAACTTTCGATGGCTCAGAACCTAAAAAACGCCCTAAAAAAATCCGTCGGAAATTCGTATTGCCCTGTACCGAATGTGGCAAGGTATTTGATCGTTTAGATAGTTTGAAGAGACATGCTGTGGTACATGCTAAGAAACGAGATTTTTCCTGTGATATTTGTAAATATAGATTTGCGGCTGAAAGGTCTTATATAGCCCACATGCGGGTACATGAAAATGAGGCTAATGATGGGACTAATTCTATCGTCTTTACTTGCGCCCTCTGCCcacaaagttttaaaataaaatctgtaCTTGTACAACACACTCAAAAACATGCAAAGAGCCAAAATAAAGGAACAAAGAATAAAGGGAAAACAAAGGATATGCAGTCAATGGAAAAATACCCACATCAATTGGAACCAGACAAATCAAATGCAATGAAACAAACGCTGGAAGAAATGTTGTCGCTCAGATTAGCGAAAAACACGCCCTATGATGAAGATGACAAAAGCAAAGATGTCGAGCCAAACACGGTGATTAAAAAAGAGTTGGAGACATCTCATCGCAACGAATACGATACCAATTTTGATAAAGAACTAGATTCCGATAATACGGAGACTGAGGACGAAGTTCATGACAATTCCAACAAGCCAGTGAGTGTAGTAGAGACGGGAGTAGGAAaaattgaaaaGCCTAATATTCGCAATCGTAGAAGTGGTAATTATCCATGTGAAGTCTGTGGCAAAGTATTCGATCGTCCATACCGTGTAAAACGTCACAGTTCTGTTCATTCGCTCGAAAGGACTCACGCTTGCGAATTATGCACATATCGCTTTGGCACTTCAAATTTATTGAAGATCCATATGATACAACACGAAAGCGAAACTGGCGATAATTTAACTACCCAATCTCCTCCCGATGGTTTCAAATGCCCCGACTGCCCCAGACGTTTCGAAAAACATGCATTACTTTCCGCTCATCGGCAAATACACACACGCAGTGAATCTGAAACAAATTACTCTTGTACAGTATGTCGGTGTAACTTTGTATCAGTAAAATATCTCACAGAACACATAACCAATAAACATCCTGAAGTGGAGAAACATAAATGTGATCAATGTGATAAGTCTTTTGTGCTGCACGCCCATTTTGTGGAGCATATCAACCGACACAAAGGCAACAAGAACCTGGTTTGTCTTATATGTGAAAAAGAATTCGGTTATACGAATACGCTAAAGGAACACATGCGTACGCATAATAATGAAAGTTCATTTCTATGTCCTCAATGTGGAAAAACATTTAAAAGTTCTAGTAACTTAAGCCAACATATGAAGAGGCATTTTGGCCTTAAGAAATACCAATGTCCTGAGTGTCCAAGCCGTTTCAATTGTCGCTCGGATCTTATTAAGCACATGTCGACGCACAGGAATGGTAAACCGCATGCTTGTGATGTCTGTGGATCACGCTTCACCAGAGCATATTCCCTACAAAAGCATAAATCTTTGCATACCGGGGAGAGGCCATATAAATGTAGTCAATGTAATATGGCGTTCGCTATTAATGACCATCTACGAAGGCATATGCGAACTCACACTGGCGAAAAACCCTACAAATGCAAATATTGTGAACGTGCCTATGCGGAAAGTGGCGATCTGACCAAACATCTACGGACACATGTGGGCGAGAACACCTATATGTGTGACCAGTGTCCTTCGGCTTTCAAATATCATGCAGAACTACGTCAGCACGTTTCCGAACACTACAGGATGGCTCATATGCACAAAATGTGTGAAGAATCACAACAGcagtaa
Protein Sequence
MSAPIEASKCRTCLQDCSRYQQLEEYVEKSCKIIDMLDEIVPQIHIRIPSLFSHLVCGICADKLLNSYKFQQLCLETNKRLHAMLANNDARPAEKETQLEDPFTGVEMKQELNVDTNYECEIHPEVNLESKDDWKNDNGGDCGDAGGNDRDTDSSNEKLSILRDRKLNKTFDGSEPKKRPKKIRRKFVLPCTECGKVFDRLDSLKRHAVVHAKKRDFSCDICKYRFAAERSYIAHMRVHENEANDGTNSIVFTCALCPQSFKIKSVLVQHTQKHAKSQNKGTKNKGKTKDMQSMEKYPHQLEPDKSNAMKQTLEEMLSLRLAKNTPYDEDDKSKDVEPNTVIKKELETSHRNEYDTNFDKELDSDNTETEDEVHDNSNKPVSVVETGVGKIEKPNIRNRRSGNYPCEVCGKVFDRPYRVKRHSSVHSLERTHACELCTYRFGTSNLLKIHMIQHESETGDNLTTQSPPDGFKCPDCPRRFEKHALLSAHRQIHTRSESETNYSCTVCRCNFVSVKYLTEHITNKHPEVEKHKCDQCDKSFVLHAHFVEHINRHKGNKNLVCLICEKEFGYTNTLKEHMRTHNNESSFLCPQCGKTFKSSSNLSQHMKRHFGLKKYQCPECPSRFNCRSDLIKHMSTHRNGKPHACDVCGSRFTRAYSLQKHKSLHTGERPYKCSQCNMAFAINDHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPSAFKYHAELRQHVSEHYRMAHMHKMCEESQQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-