Ptie058388.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- -
- Assembly
- GCA_963931995.1
- Location
- OZ008370.1:10138603-10143055[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.092 20 8.1 1.9 1 23 250 274 250 274 0.92 2 16 0.0055 1.2 12.0 0.7 1 20 290 309 290 312 0.91 3 16 2.5e-07 5.5e-05 25.6 1.7 2 23 316 337 315 337 0.96 4 16 9.4e-06 0.002 20.7 2.6 1 23 343 365 343 365 0.98 5 16 3.7e-05 0.008 18.8 0.6 3 23 373 393 371 393 0.97 6 16 0.00055 0.12 15.1 0.6 2 23 400 421 400 421 0.96 7 16 5.8e-05 0.013 18.2 0.8 1 23 427 449 427 449 0.98 8 16 9.9e-07 0.00021 23.7 0.4 1 23 455 477 455 477 0.97 9 16 0.00014 0.031 17.0 3.5 1 23 536 559 536 559 0.93 10 16 0.0091 2 11.3 0.3 1 20 575 594 575 597 0.91 11 16 8.3e-07 0.00018 24.0 2.3 3 23 602 622 600 622 0.96 12 16 7.2e-05 0.016 17.9 2.8 1 23 628 650 628 650 0.98 13 16 3.7e-05 0.008 18.8 0.6 3 23 658 678 656 678 0.97 14 16 0.00055 0.12 15.1 0.6 2 23 685 706 685 706 0.96 15 16 5.8e-05 0.013 18.2 0.8 1 23 712 734 712 734 0.98 16 16 1.8e-06 0.00039 22.9 0.4 1 23 740 762 740 762 0.97
Sequence Information
- Coding Sequence
- atgttaaaattatccCACCAGGGAGTTAATTcccttcaaaaatttaaatgtggcGAAGTATTTTGTATTACTGCAGCAGCCGTTTTTAATGTGTCTTGTTGTATATGTGGAAGCGAGATACATTTGGAACAATTTTCTAGCCACTTTCAAATCCAACATCTTACCTTAGCGGAGGAGAGCATAAATCTAGAAGTCGTAGAAAATAAAAGCAAGGATAATTTGGCAAATGATTCTTGTGTATTGGAACATACACCCATTAAAGAAGTAAACGCAGCAGATTATCGTATCAAGCAAGAGGTGTTGGAGTGTTCTGCGAAATCAACAAATAGTTTGGAAGATGATACAGACGACGACGAAGACAATAAGTGTTTACAAGAATTAGTAATTGCATCTAAAGCGAGACAGAAAAAACGTAATTATCGCGAGAATTTTAAAGAAGATACAAACAAGATTGTTGTACCAAAGAAATATATTACCAGAAATGCCCAGAGTCGACAATTCGTAATAGAAGAGAAGCTTGAAGATCCATTGCAGACCAAAGATTGTGATGGCGAAATTCTGGTCACACCTTTGGTTGTTGAGAATTTAAGTAAAGACGAATTGGACTATAATGAAGTTGAAATAGAGGAAAATAATCATGTCGCAGAAAAGGATTTGTCCGCTGAAGAAAATGACTCTGACAGTAATTCTGATCGAGATAAAGATCAGTCTGTTACCGATAAAAAAGATCTTACGGCGGAATTTCCATTCTCCTGTCCACTATGTAGCAATCGTTCTTATCGTACCAAAGCTGGTTTACAAAAGCACAACCACAGCGTGCATAATCCCAATAAACCACCCAGGAAACGCAAAGGATCTAAACCCCAACACAAGTGCGACATATGCAACGAAGTATTCCGTTCACCTCGTGTGCTACGGGGACACCGATGGAAGCATACGGGTATTGTTTGTGATATATGCGGCAAATCATTTACACAAAGTGGACATTTGAAGCGACATAAACTTCGACATACTGGCATAAAGGCTTTCAAATGTAAAGAATGTAACAAAGAATTCTTTACGTCAAAGGAACTTAAATCACATATGGTTTCTCATACAAAAGTAATGGCAGTGATATGCGAAATTTGTGGTAAAGGCTGTAGAAATCAGGGGGTCTTTACCGCGCACATGCGTCGACATACAGGTGAGCGACCTGCAAAATGTGATGTGTGTGGTAAAAGCTTTTTCTCCGGTCACGATTTAAATGTACACGCCGTGACACATACCAGTGAAAGGCCATTTAAATGTGATATCTGTGGTTCAACATTTCAGCGTAAGAAGGCGTTACGTGTCCATAAACTTATACATTCGAAAGATCGTAAACATGTGTGTAGAATCTGTGGTAAAGGTTTTGCCCAATCGGGTGGTCTAAATTCGCACATGCGTTCACATGATTCTGCTATAGAGAAAACGACTACCAGTACTGAAATTGGCTCAGCGGTGCTCATTCCTGTAGATGTGTTACTGAGTAGTGCAGAAAGTAACCCACAAACAGAGATAAATGTTTCCGTTCGCAATAAAGATCAGTCTTTTCCCGATGAAAAAGATCTTTCCGATGAACTTCCATTCCCCTGTCCAATCTGTAAACGTTCTTATAGTACCAAACATGGTTTACAAAAGCACAACCACAGCGTTCATAATCCCAATAAACCCCCCAGAAAACGCAAAGGATCTAAACCCCAACACAAGTGCGACATATGCAACGAAGTATTCCGTTCAGCTCCTGTGCTACGGGGGCACCAATGGAAACATACAGGTATTTTTTGTGATATATGCGGCAAATCATTTACACAAAGCGGACATTTGAAGCGACATAAAATTCGACATACTGGCATAAAGGCTTTCAAATGTAAAGAATGTAACAAAGATTTTTTTACGACAAAGGAACTTAAATCACATATGGTTTCTCATACAAAAGTAATGGCAGTGATATGTGAAATTTGTGGTAAAGGATGTAGGAATCAGGGGGTCTTTACCGCGCACATGCGTCGACATACAGGTGAGCGACCTGCAAAATGTGATGTGTGTGGTAAAAGCTTTTTCTCCGGTCACGATTTAAATGTACACGCCGTGACACATACCAGTGAAAGGCCATTTAAATGTGATATCTGTGGTTCAACATTTCAGCGTAAGAAGGCGTTACGTGTCCATAAACTTATACATTCGAAAGATCGTAAACATGTGTGTAGAGTCTGTGGTAAAGGTTTTGCCCAATCGGGTGGTCTAAATTCGCACATGCGTTCACATGACGCTGCTGTGGAGAAAACGACTACTAGTATTGAAACTGCCTCACCAGTACACATACCTACAGTTGTGTTAATGAGTAGTGTAGAAAGTAACCCACAAACAGAGACAGATATTGTGAGCGACAGTAGGGAGCTTGAAGATCAAGTAATTTGCGAATATATGGTGTAA
- Protein Sequence
- MLKLSHQGVNSLQKFKCGEVFCITAAAVFNVSCCICGSEIHLEQFSSHFQIQHLTLAEESINLEVVENKSKDNLANDSCVLEHTPIKEVNAADYRIKQEVLECSAKSTNSLEDDTDDDEDNKCLQELVIASKARQKKRNYRENFKEDTNKIVVPKKYITRNAQSRQFVIEEKLEDPLQTKDCDGEILVTPLVVENLSKDELDYNEVEIEENNHVAEKDLSAEENDSDSNSDRDKDQSVTDKKDLTAEFPFSCPLCSNRSYRTKAGLQKHNHSVHNPNKPPRKRKGSKPQHKCDICNEVFRSPRVLRGHRWKHTGIVCDICGKSFTQSGHLKRHKLRHTGIKAFKCKECNKEFFTSKELKSHMVSHTKVMAVICEICGKGCRNQGVFTAHMRRHTGERPAKCDVCGKSFFSGHDLNVHAVTHTSERPFKCDICGSTFQRKKALRVHKLIHSKDRKHVCRICGKGFAQSGGLNSHMRSHDSAIEKTTTSTEIGSAVLIPVDVLLSSAESNPQTEINVSVRNKDQSFPDEKDLSDELPFPCPICKRSYSTKHGLQKHNHSVHNPNKPPRKRKGSKPQHKCDICNEVFRSAPVLRGHQWKHTGIFCDICGKSFTQSGHLKRHKIRHTGIKAFKCKECNKDFFTTKELKSHMVSHTKVMAVICEICGKGCRNQGVFTAHMRRHTGERPAKCDVCGKSFFSGHDLNVHAVTHTSERPFKCDICGSTFQRKKALRVHKLIHSKDRKHVCRVCGKGFAQSGGLNSHMRSHDAAVEKTTTSIETASPVHIPTVVLMSSVESNPQTETDIVSDSRELEDQVICEYMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -