Ptie066758.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- ZFY
- Assembly
- GCA_963931995.1
- Location
- OZ008370.1:155967241-155975821[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.2 6.9e+02 3.3 0.3 2 23 11 32 10 32 0.93 2 19 3.6e-05 0.0078 18.8 2.3 2 23 38 60 38 60 0.95 3 19 8.6e-07 0.00019 23.9 0.8 2 23 67 88 66 88 0.97 4 19 0.0089 1.9 11.3 1.2 1 16 94 109 94 111 0.91 5 19 3.2e-05 0.0069 19.0 2.6 1 23 130 152 130 152 0.94 6 19 0.073 16 8.4 0.6 2 23 161 182 161 182 0.96 7 19 8.2e-06 0.0018 20.9 1.3 1 22 187 208 187 210 0.90 8 19 2.7e-05 0.0058 19.3 0.7 2 23 217 238 216 238 0.97 9 19 1e-05 0.0023 20.5 2.4 1 23 244 267 244 267 0.98 10 19 0.21 46 7.0 0.7 7 23 345 361 339 361 0.85 11 19 0.073 16 8.4 0.6 2 23 370 391 370 391 0.96 12 19 1e-05 0.0022 20.5 0.8 1 22 396 417 396 419 0.90 13 19 2.7e-05 0.0058 19.3 0.7 2 23 426 447 425 447 0.97 14 19 3.7e-07 8e-05 25.1 2.9 1 23 453 476 453 476 0.98 15 19 0.00014 0.03 17.0 3.5 1 23 528 550 528 550 0.96 16 19 0.16 35 7.3 0.8 2 23 559 580 559 580 0.96 17 19 2.5e-06 0.00053 22.5 0.8 1 22 585 606 585 608 0.90 18 19 1.8e-05 0.0039 19.8 0.7 2 23 615 636 614 636 0.97 19 19 1e-05 0.0023 20.5 2.4 1 23 642 665 642 665 0.98
Sequence Information
- Coding Sequence
- ATGCATCAAGGTATTGTCGATCAGGCTGTCCAATGTTCCATTTGCAAGGCGTGGCTCAAAAATGAGAACAGTTTGCGTCTGCATCGTTTTGTCCACGAGGAGCATCTCAACACTTGCGATGCTTGTGGAAAAGTGTTCAAAACCCGTCACACGCTGCGTCGTCATGTTAAATATTGGCATGAATTGGATCGTAATTTACAGTGCACAATGTGCGATAAAGTTTTTCGCCAAAAGCGTAATCTGGATGAACACATGGCCACACACACTGGAGTCCAGTTGTATACGTGTCCTCACTGCGGTAAAGAGTCACGATCCAAGTCAAATATATGTGCAACTATATACCGTTTGCGTAGTCACATCGAATCCGTGCATAATAATGTTTACCATCACATCTGTGATATATGtgggaaaaaattcaaatcgaaaaCCGCATTTCAAAAACATTATGACGAACATCAGGGCATTGTTGAGCCGGCGGCCCAATGTGCCATCTGTCATGCTTGGCTAAAAAATCAGTATAGCCTAAAGGTCCATATGACCATACATGAGAATACACAATTCCCTTGCGACACATGTGGAAAAATGTTCAATACAAAAAAGAATCTGAGTCGTCACAAAGGCTATTGGCACCGATTGGAAAAGAATTTAAAATGCAGTTATTGCGAAAAAATATTCCGTGAAAAACGCAATCTGGACGAACACATGGCAACGCACACGGAAACGCAGCTCTATACGTGTCCGCACTGTGGCAAAGAGTCCCGATCAAAATCCAACATGTATGTTCACATTAAACGTCAACATCCTGATGAATGGTGGCAATCGAAGCAAGCACGATATCGTATGAAACCTAAAGATGACGAGTCGAATGCGGTGGCAATAGAACCTAACGTTCTTACATCTgcattaacattagatAGTCATGATAAAGGACCACTGTATTCCCAGCAGTCGGGATGTGCAACTATATACCGTTTGCGTAGGCACATCGAATCCGTGCATAATAATGTTTACCATCACATCTGTGATATATAtgggaaaaaattcaaatcgaaaaCCGCATTTCAAAAACATTATGACGAACATCAGGGTATTGTTGAGCCGGCGGCCCAATGTGCCATCTGTCATGCTTGGCTAAAAAATCAGTACAGTCTAAAGGTCCATATGACCATACATGAGAATACGCAATTCCCTTGCGACATATGTGGAAAAATGTTCAATACAAAAAAGACTTTGAGTCGTCACAAAGGCTATTGGCACCGATTGGAAAAGAATTTAAAATGCAGTTATTGCGAAAAAATATTCCGTGAAAAACGCAATCTGGACGAACACATGGCAACGCACACGGAAACGCAGCTCTATACGTGTCCGCACTGTGGCAAAGAGTTCCGATCAAAATCCAACATGTATGTTCACATTAAACGTCAACATCCTGATGAATGGTGGCAATCGAAGCAAGAACGATATCGTATTAAACCTAAAGATGACGAGTCGAATGAGGTGGCAATAGAACCTAACGTTATCATCACACCTATGGGGGCTGTGCTTAGTCACATCGAATCCGTGCATAATAATGTTTACCATCACATCTGTGATATATGtgggaaaaaattcaaatcgaaaaCCCCATTTCAAAAACATTATGACAAACATCAGGGCATTGTTGAGCCGGCGGCCCAATGTGCCATCTGTCATGCTTGGCTAAAAAATCAGCGCAGTCTAAAGGTCCATATGACCATACATGAGAATACGCAATTCCCTTGCGACATATGTGGAAAAATGTTCAATACAAAAAAGAATCTGAGTCGTCACAAAGGCTATTGGCACCGATTGGAAAAgaatttaaaatgcaattattgcGAAAAAATATTCCGTGAAAAACGCAATCTGGACGAACACATGGCAACGCACACGGAAACGCAGCTCTATACGTGTCCGCACTGTGGCAAAGAGTCCCGATCAAAATCCAACATGTATGTTCACATTAAACGTCAACATCCTGATGAATGGTGGCAATCGAAGCAAGAACGATATCGTATTAAACCTAAAGATGACGAGTCGAATGAGGTGGCAATAGAACCTAACGTTATCATCACACCTATGGGGGCTtcatga
- Protein Sequence
- MHQGIVDQAVQCSICKAWLKNENSLRLHRFVHEEHLNTCDACGKVFKTRHTLRRHVKYWHELDRNLQCTMCDKVFRQKRNLDEHMATHTGVQLYTCPHCGKESRSKSNICATIYRLRSHIESVHNNVYHHICDICGKKFKSKTAFQKHYDEHQGIVEPAAQCAICHAWLKNQYSLKVHMTIHENTQFPCDTCGKMFNTKKNLSRHKGYWHRLEKNLKCSYCEKIFREKRNLDEHMATHTETQLYTCPHCGKESRSKSNMYVHIKRQHPDEWWQSKQARYRMKPKDDESNAVAIEPNVLTSALTLDSHDKGPLYSQQSGCATIYRLRRHIESVHNNVYHHICDIYGKKFKSKTAFQKHYDEHQGIVEPAAQCAICHAWLKNQYSLKVHMTIHENTQFPCDICGKMFNTKKTLSRHKGYWHRLEKNLKCSYCEKIFREKRNLDEHMATHTETQLYTCPHCGKEFRSKSNMYVHIKRQHPDEWWQSKQERYRIKPKDDESNEVAIEPNVIITPMGAVLSHIESVHNNVYHHICDICGKKFKSKTPFQKHYDKHQGIVEPAAQCAICHAWLKNQRSLKVHMTIHENTQFPCDICGKMFNTKKNLSRHKGYWHRLEKNLKCNYCEKIFREKRNLDEHMATHTETQLYTCPHCGKESRSKSNMYVHIKRQHPDEWWQSKQERYRIKPKDDESNEVAIEPNVIITPMGAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01175878; iTF_01175310;
- 90% Identity
- iTF_01175878; iTF_01175310;
- 80% Identity
- iTF_01175878; iTF_01175310;