Pfun022416.1
Basic Information
- Insect
- Phania funesta
- Gene Symbol
- -
- Assembly
- GCA_963932375.1
- Location
- OZ010655.1:67568457-67571339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9 1.8e+02 3.7 0.0 2 23 219 240 218 240 0.95 2 12 2.6 2.4e+02 3.3 6.4 1 23 246 269 246 269 0.95 3 12 1.6 1.5e+02 3.9 0.5 1 20 282 301 282 305 0.74 4 12 0.022 2 9.8 0.4 1 21 353 373 353 373 0.98 5 12 0.14 13 7.2 2.0 2 23 409 429 408 429 0.96 6 12 0.00087 0.079 14.2 4.1 1 23 444 466 444 467 0.93 7 12 0.0021 0.19 13.0 0.3 1 23 475 498 475 498 0.96 8 12 0.0003 0.027 15.7 0.4 3 23 505 525 504 525 0.97 9 12 1.4e-06 0.00013 23.0 0.8 2 23 531 552 530 552 0.97 10 12 0.0052 0.48 11.8 2.2 1 23 558 580 558 580 0.98 11 12 0.0021 0.19 13.0 3.1 1 23 585 607 585 607 0.94 12 12 0.26 24 6.4 4.7 1 23 612 636 612 637 0.96
Sequence Information
- Coding Sequence
- atgaaaccgCGATGTCGTTGTTGTTTAATAACAAACTCCAATACCTTTTTCGATATTTTCGAACAACATATGTCTGGGACTACCTACGCCGAGAATATAAGCTTCTTAGCTGAAGTACAAATAGAACTCAACGATGGGCTATGTCAGCATATATGTTCCAGTTGTTACGAGGAATTGCATCGTATATATAACTTCTGCTTAAAGGTACGGCAAGCTGATCAAAAACTACGACAAGAATTGGAAGCCACGCAAAATCAAATAGAAGAGGATCAGATGGAAAATGTTCAAGTATTGGATAATGAATACTTCGCTTCAGTAGACGACAACGTCATGCAAGTGTGTGTTATGGAAGAAATACTGGAACAGGAAGTCGaccaagaaaatgttttaattgtagAGGAAATTAATGACCTTGAAGAAATTAATGTTGTGGATGAAATAATAGATCCAGTTAAAAATCAAGAAGCAAAATCTTACAATCAAAAAGATAATTTGTTAGAAGGCTTAGCTCAGGTGGCGGCCACTCaggaaaatgtaaatataatcgATGATCCCGGCCTTAGTGATACATACATTCCAGAAGATGAAAATGATGAGGACTATCTGATTGAGTTTGATTCGAACCAAACGAATAATTTTAAGCCACAAAAATGGAAATGTGGAGAATGTAAAATGATATTGCGCGGGGATGTTTCATATGAGGGTCATATGAATATACATAGACAATTTAGGCCGCATAGATGTAATCAATGTCAAATGAACTATAGATGTCGCGCAGCCCTCAAACGAcataaaaacttgaaacattCCTTGCCCACGAATTATACAAAGTCTAATATAACATTTATATGCATGCTTTGTCATAAGAACTtttattctgaaattattttctctCTACATCAAGCTATCGTTCATTGGCAAGGTGACAAATGTCCGTTTGAATGTGACTATCTAAATGAGaataatttaaagcaacatTTAGAAAGTATACACGAAGAAAATATAACTTCTGACAcagaaagattttatttaaaccttTCCAACAATTCATCTGAGTACCAATGCTTTAGATGTTccgaaatatttcaaaaactggACCTTTTACAAGATCATATTAGACCATGCCAAACAATGTATGAAGAAAAGTTGCAAGATGATATTATTGTTAACGAAAATGGAAACATTGTGGAAATAGTAAAAATAGAAGGATCCGACATTTCTGTACAAtgcaatttttgtcaaaaaaaattacttaaaaggaACCTGAGTAAACATATGGAGTTACATAAACGTAAAGAAGAAGAGAAACTATTGGATGATTCGAAATCATACCTGTGCACCCTTTGTCCCcgcgaatttaaaaattcgaaatcgcTATATCAGCACAAAAAATCCCATCATGGAGAGATCTCCGATATAGTGTACGTTTGTGCGGATTGTGAGCGTCAATATGCCTCGCAATATTTACTGGACACACATCGCAAACAAGCGCACAAGGAACGCGATAATATCTGTACGATATGTGGTAATGCTTTCAAGTTGAGAAATCAACTGGTTAATCATATGAAATTGCATTTAGAAAAGAATATACCGTGTCCCCATTGTGATAAGAAATATGCCAGACAGTTTGATTTAAATGTTCATCTTAGATCACATACTGGCGAACAGCCATATGCCTGTCACTTGTGTGAAAAACGTTTTGCCATTAAAGTTCGCCTAACCTATCATCTTCAAAAACACTATGGTATCAAGCATTACTGTAAAGAATGTGGTGCAGAATTTAATTCCAAACAGAAGCTTAAGGCGCATTCATTTAAACATACGGGTATGCCTTACCGGTGTCAGATGTGTGATGATCATGGTTTTGCCACCCGCAACACGTTTAAACGCCATTTAACCCGCGTTCACCATACCTCAATACCTGAGGAAGAACTGAatgaaatgtttcaaaaaaatactgggaaaaatgttaacattaaACAGATTGATGAACAAAATCTTGTACTGACCGCCAGCGAAGACGATAATCAAGAGGAAATAGAAGTACTAGGAAAGTAA
- Protein Sequence
- MKPRCRCCLITNSNTFFDIFEQHMSGTTYAENISFLAEVQIELNDGLCQHICSSCYEELHRIYNFCLKVRQADQKLRQELEATQNQIEEDQMENVQVLDNEYFASVDDNVMQVCVMEEILEQEVDQENVLIVEEINDLEEINVVDEIIDPVKNQEAKSYNQKDNLLEGLAQVAATQENVNIIDDPGLSDTYIPEDENDEDYLIEFDSNQTNNFKPQKWKCGECKMILRGDVSYEGHMNIHRQFRPHRCNQCQMNYRCRAALKRHKNLKHSLPTNYTKSNITFICMLCHKNFYSEIIFSLHQAIVHWQGDKCPFECDYLNENNLKQHLESIHEENITSDTERFYLNLSNNSSEYQCFRCSEIFQKLDLLQDHIRPCQTMYEEKLQDDIIVNENGNIVEIVKIEGSDISVQCNFCQKKLLKRNLSKHMELHKRKEEEKLLDDSKSYLCTLCPREFKNSKSLYQHKKSHHGEISDIVYVCADCERQYASQYLLDTHRKQAHKERDNICTICGNAFKLRNQLVNHMKLHLEKNIPCPHCDKKYARQFDLNVHLRSHTGEQPYACHLCEKRFAIKVRLTYHLQKHYGIKHYCKECGAEFNSKQKLKAHSFKHTGMPYRCQMCDDHGFATRNTFKRHLTRVHHTSIPEEELNEMFQKNTGKNVNIKQIDEQNLVLTASEDDNQEEIEVLGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -