Pfun018477.1
Basic Information
- Insect
- Phania funesta
- Gene Symbol
- -
- Assembly
- GCA_963932375.1
- Location
- OZ010654.1:85112929-85117832[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.2 2e+02 3.5 1.0 2 20 457 475 456 477 0.92 2 18 1.4 1.3e+02 4.1 0.5 4 23 491 511 486 511 0.84 3 18 0.0024 0.22 12.8 1.5 2 19 523 540 522 542 0.95 4 18 0.31 29 6.2 1.9 2 23 584 606 583 606 0.94 5 18 0.82 75 4.8 0.4 5 23 616 634 613 634 0.92 6 18 0.00078 0.071 14.4 3.9 1 23 641 664 641 664 0.94 7 18 4.3e-05 0.004 18.3 2.8 2 23 672 693 671 693 0.97 8 18 0.31 28 6.2 0.0 1 21 702 722 702 723 0.93 9 18 1.1 97 4.5 1.5 1 22 743 764 743 767 0.90 10 18 0.74 68 5.0 6.3 1 23 772 794 772 794 0.93 11 18 0.36 33 6.0 0.2 1 23 810 835 810 835 0.96 12 18 0.26 23 6.4 3.9 1 23 847 870 847 870 0.96 13 18 0.13 11 7.4 4.9 2 23 876 898 875 898 0.95 14 18 0.00023 0.021 16.0 2.0 2 23 902 924 901 924 0.95 15 18 1 93 4.6 5.4 1 23 930 953 930 953 0.94 16 18 0.00012 0.011 16.9 0.2 1 23 958 980 958 980 0.98 17 18 0.0032 0.3 12.4 4.2 1 23 986 1008 986 1008 0.98 18 18 0.014 1.3 10.4 0.5 5 23 1024 1043 1014 1043 0.87
Sequence Information
- Coding Sequence
- atggcGGTTAATGTTTCCACAATTATTAGTGTCTGTTTATATTGCAAAACAAACTCGGAAACTGCTGCTGAGAAGGATTTTCATGATATCTATGATGATGTGGGTCTGGAACTACAACTTCACACTTTAGTGGAAACCTATTTCaatgtaaaagttaaaaatgataCCAAAAAATACTTGTGCGATGATTGCGTCAATCGTCTAATTGAATTGTATGATTTGGATGAACATGCCAAGGAAAAAAGGAGCAAAGCAACCGATTCGGAAATACCAGCAATCATAAAAGTTGAGCCGGATGTTTTCGACAATGAAGAAATACATGACTGTGGCGGTAACATAATTATAGAGTCGGAATTTATTAACGATGAAGAGCAAagcgaaaattttgtttgggaAATTTCTAAGGCACATACAAGTTGTGAAAATAAACCTAATGGAGCTAACTTGAAGCAAAGTGATATtccaatagttttaaataaaagtgaataccTAAAACAAGAgggaaaagaaaagcaaattagTAAAAGTACCGAAAATGTAGAAACCCTAGGAGGAACATCGAAATCTGCTGTTTTATATCAAGAACATAGTCCAGATGATATTGATATTGATCAAAGCTTTCTAGAAGAAGATTATCTTGTTAGAAATGAGAAAGATATGGCACTAGATGTGATAAACCCGAGGGAGCCAGAATGCAATGAATATGTTGAATTTGTCGAAGATGAAGGGGACCAAAACATGGTAATAGAAATCATGGTTAACAGAAACGTAGATAGCGTTGAGGAATTGGAATTTAAAGAAGAAAGTGAAGTAGAAGCTATTAGTAAAGGCGATCAAATTTTCGaagcagaaaatgaaaaaattaatactgtTCCAAAGAGTTATAACGAAAGtagttttatgaaatataaaatgttcggCGAAAAAGAATTGGAAAGTgacgaaataaatttacaaactgTTGATAAACAGGAACCTGATATAGAAGACATATATATTGAAGAAGTCGGGAATATTTATAATGAAGATGACTGGCCAACAAATGAAGAGAATGAAtgtgaaaatgaaataactagTGATGtggaaaatgaaattataaattataattcagAAAAAAGAGCAATTCAAAACGTAGAAACATTCAAATCTAATAAAAGTTCTAATCAAAATATTACAGAGAATATTGATATTGATCAAATAATTGGGGAAGACCAGGATGAGATTTCAAATGATGCTTTTTCTCTTGAAGAGGAGTATTTAATAGAAGAAACTATTTGCTCTGAGGATTATgataatattgatttaaatgaatatttggaaaatgttttggTAACACAATTTAAAGACTTACTATTAAACTGGAAAACGGAATGTAAATTATGTCTAAACAAATTCGAAACCTTTGAAGAATTAATCAAGCACTCGTGTATAATAGAATTTGAAGAGGAACAACAGTTCTGCTGCATAATTAAAGACTgtgatgaaaatataaataatttatcgaCTTTGGCAAGGCATTTAGTATTAAAACATTATGATAAATTAGAAAGcacaTCAATTTATGGCAAATGTCCAGATtgtcaaaaaacattttcaaatattatagattttaacaaacattCTTGCTGTCGCAATATAAAACGAAAAGCTGGTTCACCAAATTACTGTCAATACTGTGATATGGATTTTCAATCTTTAAAAAGATACGTGTTTCACATGCAGTTTCATTTAACAAATCATCGACCGAAGGTGTGTTTATTGTGTggtcatttatttaataattccaaTGATTTCTTCGAACATACTCAATATCAGCATACACCTAAAACAGCTATGGCTTGTATAAAATGCGATCGgttctttaaagaaaaagatgTCTTTGACAGTCATATGGAATTGCACGAGGATTCAAAATATCAATATCAATGTAATCTTTGCCCTAAGAAATATACtaataaatttggtttaaagcaacacaaggATATCTGTCATAATAACAAATGCAATGCTTTAAAATGCAGTCATTGtgaaaaagaatttgttaataaaGCATCGTATCGTAATCATATAAAATCTCATGCAACTGATGTTCAAGTGGAAACATTTATATGTTCAATATGTGGCATTATAACTAATAGTTTGGAATTTATAAAGAATCATATTAAGTCAGATGCAGATTCTCCTTGTTTTTCATCGCCAATAGAAACGAAAACCTTAGCTTTGGGTTATACATGTGAAAACTGTTCCCTTGATTTTCTTACAATCAAACATCTTAAAGAACATCGTTTAAGTGAAAGTCATAGTGATGACCTATTCCATTGCGTTATATGTCGACAACGTTTCAAAAGTCTACGTCATATGCGAAACCATTCCACTAACCACAAAACATTCAAAGAATGGCTGAAATCATTTCCAATAACGCGTTTTTTCGTCTGCAATATAGGTGATTGTCAAGAGTTCTATCCAATATGGACCTCATTATATTATCATAAAAAACGTCCACATAAAACTGAAGATAACTCGCTCTTACCTAACGAGTTTAAATGTCAATTTTGCCATCAATTGTGCTCTTCGAAAATGTCACTGGCTGTTCATGTGGCTAGAAGCCATAATAATTCCAACATTAAATGCACTTACTGCAAACGAACTTTCAAGTGCCAACAGTTTTTGCAAGACCATATTGATAGATTTCATACCCCTGTTGAATGtgatgtttgtttaaaaaaatttaaacatcgtCGCAATTTAGAAAGTCACCAAAAATTAGTACATCTCAATCTAAAGCGCTATTTTTGCAAACACTGTGAAAAAGGTTACTTTCATAAAAGTGAAAGGGATATACATGAGAAGAAAGTGCATCCTGATATACCTTACAAATGTGAAATTTGCAATTTCGTAACCAATTATCCGGATTCTTTAGAAATTCACATGGACAAGCACAACAatcagttaaaatttaaatgtacaaTTTGTAGCAAAGCATTCGGACGCAAACAACTTTTACAATGCCACTTAAAAAGACATCTTAACAAAAAAgaCTATAGTTGTgctaaatatttgaaagaaagcGGCTGTGATGCAATGTTTATGACCTACAATCTATTGAAAAAACACATCAAAACTAAACATGAAAACTCAAGTTTCAATATTAATATGCAAAATGAGGAACAACGCAAAAAAACATCTAATAAACGTCTAGAAATTGtgcaaatagaaaatatttcctataaaatcTTGGATTGTGAAGATGACAGTAGGAGCGATAAGAGTCCTACTTCTACTTTAATGAACTCAAATGTTGCAGATTTCGAAGAAGATGATTATGAATTGGTTTTGGAAAACGATGTCTAA
- Protein Sequence
- MAVNVSTIISVCLYCKTNSETAAEKDFHDIYDDVGLELQLHTLVETYFNVKVKNDTKKYLCDDCVNRLIELYDLDEHAKEKRSKATDSEIPAIIKVEPDVFDNEEIHDCGGNIIIESEFINDEEQSENFVWEISKAHTSCENKPNGANLKQSDIPIVLNKSEYLKQEGKEKQISKSTENVETLGGTSKSAVLYQEHSPDDIDIDQSFLEEDYLVRNEKDMALDVINPREPECNEYVEFVEDEGDQNMVIEIMVNRNVDSVEELEFKEESEVEAISKGDQIFEAENEKINTVPKSYNESSFMKYKMFGEKELESDEINLQTVDKQEPDIEDIYIEEVGNIYNEDDWPTNEENECENEITSDVENEIINYNSEKRAIQNVETFKSNKSSNQNITENIDIDQIIGEDQDEISNDAFSLEEEYLIEETICSEDYDNIDLNEYLENVLVTQFKDLLLNWKTECKLCLNKFETFEELIKHSCIIEFEEEQQFCCIIKDCDENINNLSTLARHLVLKHYDKLESTSIYGKCPDCQKTFSNIIDFNKHSCCRNIKRKAGSPNYCQYCDMDFQSLKRYVFHMQFHLTNHRPKVCLLCGHLFNNSNDFFEHTQYQHTPKTAMACIKCDRFFKEKDVFDSHMELHEDSKYQYQCNLCPKKYTNKFGLKQHKDICHNNKCNALKCSHCEKEFVNKASYRNHIKSHATDVQVETFICSICGIITNSLEFIKNHIKSDADSPCFSSPIETKTLALGYTCENCSLDFLTIKHLKEHRLSESHSDDLFHCVICRQRFKSLRHMRNHSTNHKTFKEWLKSFPITRFFVCNIGDCQEFYPIWTSLYYHKKRPHKTEDNSLLPNEFKCQFCHQLCSSKMSLAVHVARSHNNSNIKCTYCKRTFKCQQFLQDHIDRFHTPVECDVCLKKFKHRRNLESHQKLVHLNLKRYFCKHCEKGYFHKSERDIHEKKVHPDIPYKCEICNFVTNYPDSLEIHMDKHNNQLKFKCTICSKAFGRKQLLQCHLKRHLNKKDYSCAKYLKESGCDAMFMTYNLLKKHIKTKHENSSFNINMQNEEQRKKTSNKRLEIVQIENISYKILDCEDDSRSDKSPTSTLMNSNVADFEEDDYELVLENDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -