Pfun005913.1
Basic Information
- Insect
- Phania funesta
- Gene Symbol
- -
- Assembly
- GCA_963932375.1
- Location
- OZ010652.1:116604046-116608199[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00029 0.026 15.7 0.1 1 23 143 166 143 166 0.97 2 13 0.01 0.94 10.8 3.7 2 23 215 237 211 237 0.88 3 13 0.0017 0.16 13.3 0.6 1 23 366 389 366 389 0.93 4 13 0.25 23 6.5 4.7 2 23 439 461 438 462 0.95 5 13 0.0016 0.15 13.4 0.1 1 23 544 567 544 567 0.91 6 13 0.00078 0.072 14.4 4.0 2 23 618 640 618 640 0.97 7 13 0.00013 0.012 16.8 1.2 1 23 749 772 749 772 0.97 8 13 0.0001 0.0096 17.1 0.1 1 23 821 844 821 844 0.95 9 13 6 5.5e+02 2.1 1.2 1 23 862 886 862 886 0.73 10 13 0.0012 0.11 13.8 1.1 2 23 894 916 893 916 0.95 11 13 0.048 4.4 8.7 1.1 1 22 995 1016 995 1018 0.91 12 13 0.034 3.1 9.2 1.5 1 23 1070 1092 1070 1092 0.98 13 13 0.033 3 9.2 0.0 2 23 1176 1198 1175 1198 0.95
Sequence Information
- Coding Sequence
- aTGGATAATTTAGAACCTTGGAATATGTTTACTAATAATTTAATGCCAGATGAGGAACATGAAAATGATGTAGAAAGAGTTGGAGAGGGGGTTGAAGATGTTCCGTTTTCAATACCCTCACCGGTGCAAGATATGCGGGTTAAAGAAGAGCCGCAAGATGTTGCAGAAGAAATATTCGATGATGAAAATGACAATGTTCCACTTCACTTCCTCGCAAAAGCAGGCAGTAATAATGACAACAATAACAGCAGTCAAATTCGAAATCCCCAAGATGACGACGTTCTTTTTGATTTTGGCTTAGAATcatcaaattcacaaaatcGTTCTATTAATATGAAATCTGCAGTAGCAGAAAAAGATTATCCCAACATAGAGGCAGAGGACAAATACTACAATGCTATGATTAAATTTGAAGATGCTATAATTTACATATGTCCGGCCTGTGGTCATGAATTTAGTTCTCAGGACGCCTGGAAAAATCACTTGAATGTAATACATCTTTATAATACACGTCGCGGtctaaattttatacaaattgatAAACTTTACCACGAATGTCTGGAGTGTCAGAAACGCATAGCCATGCATAGTATGGAGAATTTACTCAAGCATAAATTTACCCATTTACCTTATCGGTGCAGCAAATGTATGGTGTGTAAAAGGCAATATAAATATCGCCAGGATCTTATGGTACATTTGCGGATGACCCATCGTGACGATttgatagaacttttaaaaaaggaacataaaatttctaaaaataccaATAAACAGCCACAAACTATTCGTTCAATTTTAAGTAGAACAGAAGGTAGCACGAATATTCATAATATTTCTATTGGAACTGTTAAGGAAAATGCCAGAGATTTATTTGACAACATCGAAGTAAAAAATGAGTTGCTTAATGAAGATGAAGATGATACAATGGGTGAAGATAGCCAGCCGCCAACAGCTAAACGAGCAGTAAGAGAGTTGGCTGTTTTGGTTGACGACGGCTCTACGAACGGATCAACTGGTGACCAACCCACTACAAGACGTCCTAACAAATCAATAGCAGCGGATGAAATAGATGCCTCACttgaagaatatattttatttacatgtcCGCAATGTGGCACAGAGTGTGAAACACAAGCTCAGTGGCGCCAGCATATTGAATTTGTACACGAATTTGGCACGCGAAGAGGTTTAAATTTTCGAGAGTTACTTAATCAGCAAGTTCAATGTATGGGTTGCAATATGatcCTATCAAACACTTCGATATATAGTCTACAAGTACATAAATTCAGTCATTTGCCGTACAAACAATGGATGAGTTGTAAACTTTGTTTTACTCGTTTTAATTCTAATCGCGATATTACTAAACATTTATCTAAAAAGCATCATTTAGTATCAGAGAATATTAACCGAGCAGTTGCGGATATGAATAACGATGAGGACAGCCAAGAAGCATATGGCTTTGAAAATGTTAGTGAGTCTTTTGGGGGCACTGTAGATGATTATGATTATGGTAATAGTAGTGCTGGAGGTGGTGGTTACGGAGCATCCGATAGAAAAAATCTACAATCAGGTCAAGAATCGCAATCAGTGAAATATGAGGAGCGTGATGTGTTTGAACAACATATTACGTACATTTGTCCAGCGTGCGGTAAGGAATATAATGATAAGAAACTCTGGCGTAAACATATTGTAGAAATTCATAAGTTGGGtgaattggaaaatttaaattttgaaaatataaatgatcGTCAACTGAAATGTAGAGAATGTGATAAGATTATAACAAATGCATATGGAATACAAAATGCCCAACAACATCGTATGACCCACTTGCAGTATAAATCCTTTGCAAAGTGCCGTTTGTGTCATAAAACGTATACAGATCGTAAAGGACTAATCAAACACTTAAGAAACTCTCATAAGCTAGGTGCTCGTGGAGGGTTTGGACAAATCACTCCAGTACCACCAACTACAAATCATAGTTTTTCTAGTAATAGTAGTTCTACTATAAAACCATTTGTCAAAAAGCCGTATAAGATTGCTCATTATCCACCTAAAGAAATTGTTAGATTATCCAATTATACTTATGAAATTGTACATTTAATCGAGGACGACGATGATGACGATGACGTAACTATTTCTAGTGGTTATGATTTTGCCAAAGGTGATGCTCATTTATACAGAAATAATTCGCCTTATAGTACACCCTCAAAAAGAATTACTAATATGGAACAAATAACCAGACATAAATGTGTAGATTGCGGTAGCATATTTCCTACACCACAATCCCTGCAACATCATATTCGACAAGAGCATGAATTTATAGATTATCAAAATACGCCTTCTACACAAGCAGTTCAAAATGAGGAAAAATCACATGATACTGATGATTTATTAGTGCCCAGTCGGGATATAGATGTTCAACCTGATGAACGTACAACCATGGAGtgcaatttcatttatttatgtcCCCAGTGTGGTGTAGAATTTCGCTCACAGGTCGAGTGGCGTCGTCACATTAATATTGAGCATAGTTTTGATAAACGCGACTTTTTAGGATTTAGGCTTTTGGACAAATTTCGTTATCAGTGCAAAATTTGTAAAGATACCGTAACGAGTTCGAAGCTTAAGGGATTACAGGATCATAAATTTAGGCATTGTCCTTACAAACTATATTTGAAGTGTCTGCTGTGTGGCCAATCGTACAATCATAAACCCAATATGATAGCTCATTTGCGCCAGAGACACAATATTGTAGATGTAATGGACGGGGGAGGGGGAGGGGGAGGGGCTTCGTCTTCCATGGAAGCCATGCAACCAAAACAAACACTGAGTTCAAACAACAAAGATTTTAACGATGCACCAGCCAGACCTATACGAAATTCGGATCCTTCCTATAACAATACAAACCGACCACCAGGTTTAAAGACTGTAGAAGACGTAATATCTTTTCATAACGCTGTTGATCATGAAAGCATTACGTACCGTTGTCCATCTTGCAATCAAAATTTTGATTCTCACGTCTTTTGGCGCAAACACATTGTAGATGAACATAATCTTAATCGTAGAGAAGGCTTGAATTTTCGGCGATTGGATGAGCACCATTATATTTGCTTGCAGTGTTATAAGCGTGTAACAGTAACTCACACCAAGGGCGCAATTGGTCAATTGCAATCGCATAAATTTAGACATTTACCATACAAATCATTCCGCTGTACAGCCTGCGATGGAGAATTTGTACGTAAACAgatgttttttaaacacttgGATAAACACACAAACAAGTGTTCTGGCATAAATCCTGATAATAGTTACTCTGATACTGCCGATACTAGCACAGCTccaaataataatgatgatgatgataacgCTACTGACTTGAATGCAACAATTGCCGAGACATCTGCTGCTGGAAGTTCTTCATTAACAAAATTCTCTTGGCCCACTCGCTCTTCACTGCCAAGTCAATCGACTAGTGCTATCAATAGCGAGTCAATCTCAGAAAATCAGGGTTCATTTACATTGAACTGTCCTCAGTGTGGCGCAGATTTCGAAACAACACGTGGCTGGCGTGAACACATAAATATCGAACACAATCTCAATAATAGAACGGtattgaatttcaaaaaaattagtgCAAAGCTTCATCTTTGTTTGGAATGCAATGAACATGTCAATGGGCGAAAGTTGCGCGATCTACAAGTCCACAAGTTCAAGCACTTACCCTATGGAGCTTATTTACATTGTCGCTTTTGttctatgaaatattttcacatcaGCAATATGcaggaacatttaaaaaataaacatcccAATATGgtgcaaaaaatgaaaaactatgaAGAAGATTGTGTAACACTGGATGAGGATGATGACGGCAACGTAGAGTGCGTGACTGATGGTGAAGCTGATGATAGTAGTACCGGCTTAGACGACATAGACTTATTAGAGGCCGAAGCCGAAATTGAAGAAGTTGATCCCGATAATGTTGAATCTGATGAACAATATCTCTTAGGCTAA
- Protein Sequence
- MDNLEPWNMFTNNLMPDEEHENDVERVGEGVEDVPFSIPSPVQDMRVKEEPQDVAEEIFDDENDNVPLHFLAKAGSNNDNNNSSQIRNPQDDDVLFDFGLESSNSQNRSINMKSAVAEKDYPNIEAEDKYYNAMIKFEDAIIYICPACGHEFSSQDAWKNHLNVIHLYNTRRGLNFIQIDKLYHECLECQKRIAMHSMENLLKHKFTHLPYRCSKCMVCKRQYKYRQDLMVHLRMTHRDDLIELLKKEHKISKNTNKQPQTIRSILSRTEGSTNIHNISIGTVKENARDLFDNIEVKNELLNEDEDDTMGEDSQPPTAKRAVRELAVLVDDGSTNGSTGDQPTTRRPNKSIAADEIDASLEEYILFTCPQCGTECETQAQWRQHIEFVHEFGTRRGLNFRELLNQQVQCMGCNMILSNTSIYSLQVHKFSHLPYKQWMSCKLCFTRFNSNRDITKHLSKKHHLVSENINRAVADMNNDEDSQEAYGFENVSESFGGTVDDYDYGNSSAGGGGYGASDRKNLQSGQESQSVKYEERDVFEQHITYICPACGKEYNDKKLWRKHIVEIHKLGELENLNFENINDRQLKCRECDKIITNAYGIQNAQQHRMTHLQYKSFAKCRLCHKTYTDRKGLIKHLRNSHKLGARGGFGQITPVPPTTNHSFSSNSSSTIKPFVKKPYKIAHYPPKEIVRLSNYTYEIVHLIEDDDDDDDVTISSGYDFAKGDAHLYRNNSPYSTPSKRITNMEQITRHKCVDCGSIFPTPQSLQHHIRQEHEFIDYQNTPSTQAVQNEEKSHDTDDLLVPSRDIDVQPDERTTMECNFIYLCPQCGVEFRSQVEWRRHINIEHSFDKRDFLGFRLLDKFRYQCKICKDTVTSSKLKGLQDHKFRHCPYKLYLKCLLCGQSYNHKPNMIAHLRQRHNIVDVMDGGGGGGGASSSMEAMQPKQTLSSNNKDFNDAPARPIRNSDPSYNNTNRPPGLKTVEDVISFHNAVDHESITYRCPSCNQNFDSHVFWRKHIVDEHNLNRREGLNFRRLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFRCTACDGEFVRKQMFFKHLDKHTNKCSGINPDNSYSDTADTSTAPNNNDDDDNATDLNATIAETSAAGSSSLTKFSWPTRSSLPSQSTSAINSESISENQGSFTLNCPQCGADFETTRGWREHINIEHNLNNRTVLNFKKISAKLHLCLECNEHVNGRKLRDLQVHKFKHLPYGAYLHCRFCSMKYFHISNMQEHLKNKHPNMVQKMKNYEEDCVTLDEDDDGNVECVTDGEADDSSTGLDDIDLLEAEAEIEEVDPDNVESDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742345;
- 90% Identity
- -
- 80% Identity
- -