Pfun013819.1
Basic Information
- Insect
- Phania funesta
- Gene Symbol
- -
- Assembly
- GCA_963932375.1
- Location
- OZ010654.1:2579260-2582944[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.5 7.8e+02 1.7 0.6 1 11 192 202 192 217 0.77 2 10 1.3 1.2e+02 4.2 2.1 2 20 509 527 509 528 0.95 3 10 0.092 8.5 7.8 3.2 1 23 538 561 538 561 0.91 4 10 0.046 4.2 8.8 2.3 1 23 566 589 566 589 0.93 5 10 1.3e-05 0.0012 19.9 1.0 1 23 599 621 599 621 0.96 6 10 0.00036 0.033 15.4 3.0 1 23 626 648 626 648 0.99 7 10 8.2e-05 0.0075 17.4 0.3 1 23 654 676 654 676 0.98 8 10 0.0023 0.21 12.9 0.5 2 23 682 703 681 703 0.96 9 10 0.13 12 7.4 1.4 1 23 742 765 742 765 0.93 10 10 0.00023 0.021 16.0 4.0 2 23 772 794 771 794 0.96
Sequence Information
- Coding Sequence
- atgcgTTGTTGCATACTATGTCGGAAAAAGGAGGTGAAAGGAAATGGTACCTTCTTTCAAGTTCCAAAGGACGTCAGTGCAAGAGAAAAGTGGAGCAAATTATGTTCGCGGGAATTTAACGCAAGCACTCGAATATGTATTGACCACTTTTCAAAGGCCGATATTATAACTACGGGACGTCGCATATATTTGATGCCAAAAGCTATGCCAATAGTGCAGCAGCAAAGTAAGCCACTGAAACGGAACGTTGATATGGCTTCAAATAACTCAAGCCTGTCTTGTCCTATAGATAGTGAAGTGACCTTCGAGCCACCAAAGGCGCATTTACAGGGTCCAagaagaaatattatTGTAGCTGCTCCTAAGGATCCAGAAAATGCAGGTTTTCAAAATCAAgaagaaatttcacaaaatgtttcaaatgtaaataataatgttatgCCCCCACAACTGCAGGAAGAGCCTATAATTCAAATACCGGTTATCAAATCCATATCTTGTTCCAGATCTACGCAAACAAACACCCGCCTTTGTGGTTTAGTAGAAACATCAGACTTTGCAAACGAGtttcgctttaattgtttctattgTTCTGAAGTGTTCCCgatagaaaaatggaaaaaattcattattcatttgaaaaacAACCACTTTGAAGCAGAAGAAGCATTTAAAGAATCTAAATATGTCTCCGATGATCACGATTATACTCCTTTATGCTTTCCGTCATCCATTACCATGGAGGCTGGTGTTGAAAACGTTGCTGTTAATAATAAATCTGTACCTTCATTTTTAGTGGATCCACTGGAACCCACATATAACCCATTTGAATCTATAGTTTTAAACCCCACTATTTATTATACACCAGATAAGAACAAAGCAGAtactcaaaatataaataatgaaattagcAGTTCAGTAAGTGAAATGCCAGTTTCTGGAATGAAAAATAAGTGGGGCGGCTCTAAGAAAGAGCAAAATGTTTGTGGAAATAAGTTACCAAACgaaagtattttaacaaataatgagAGTAAGCAAAAGTTAATAAGTTCTGAGGCACTGAATTTAGGAGATTCCTATCAGGAAACATCAACTAAAACAGCTTTAAGTAAAAGTACAGATGTCAAAGAAATGGATAATACAGAATGCGAAGAACAATGTGAATCAATATCTATTGGAATCGGATATCAAAATTCTACAGAGatttctttcgAATATACACCGAGTGACGTAGTAAATTCATTGCTGGATAGTATGAAAAATTATCCGGTTTTGTGGCAGTTTGATGGCGAGCCGTTCAACGAGGACTTTTTTGAAGCCGTCGAAGATTTGTGCAAAATAATTAATGAGAAATGGTCGCTTAATAttgataatataaaaatgcGACGCAGCATAAATCGTATACTAAGACTTTACTGTTATTTATACCCAAATGAAGATGTTGAAAATATTCACCAATTTACTTGCTATTACGACAAATTGGCGGCTTTTTTGCCTTCTTCTGTAAGTGATATTGCTTATGCGCGCTGCTCTCACTGTTACATATGTTATATGAACGATTTCAATTTGAAACTTCACCTGGTAGAAGAACAGAAATATTTGGAATGGCCTTACAAGTGCGAACAATGCAAGGAATGTTTCAGAGAAAATGAAGAATATGAGTTTCACAAACGTCTGCCACATTACGATAAAATCTTCACTTGTGGTCCATGCAATAAAACATTCTTTCATCGTAATTTATACAGTAGACATATAGTAGTATCTCACCTAAAAGACAATAACGAACCGGACAAATACAAATGTGATATGTGTGACAAAGAATTCCCTACAAGTTCTACTTTAAGGTATCATAAAATTCTCCACGGAGAGAAAAAATACAAGTGCCATTTGTGTCCGAAGTCATATTTTGAAAATGGAAAACTAACGCTTCACTTAAAGAGTCACCGAAAAGAATATGATTATATGTGTGAAGTTTGTGGAAAGGGATTTCTTCTTCAAACCAATCTTAGAGAACACATGAAAATGCATACTGGAGCTAAAGTCACTTGCAATATATGTAATTTAAGACTAAGAAAATCGAGTCTAAGCCGGCACCTGCGAATAGTTCATGTGGCAAATATTGGAAATGTCGAAGTAACATTAAATGGAAGAAATCATTACTATAGAAGGTTGATACGGTCAAAGCCATTACGGCCTATCCAGAGGAAATCAGGAGAAAGAAATTACCGTTGTAAAACCTGTAAGATTAGCtttggaaattataaattaattgtagAACACAACAAAAAGTTGCACTCGAATACTCCGAAGTGGCCATGTAAAATGTGCAGTACGGAATTTAGTCATAAACTAAACTTAAAACGTCATTATCGCAAAAAGCACAATTTACATGTgattcaagtttttaaattagtaGATGAAAATGAGGATTTAGATGTAGTGTTGGCCATGGAAACCGAGTATTTAGATCAGTTAGCCGAATCTCTAATTAATTCAAAGAATAAACTAAACAATGTGACAAAATCAAATATATCACCAGTAAAATCAGATTTATTGCCAGAGCATTATttcgaagaagaaaaaatacacaGCTCTACAATACAAGATGAAATAATGGAAGCTGCTGACAATATTGAAACACAAGAAATCCAAATAGAATTGATGAATGACTTTTTTACAGatcttttcaaagaaaattaa
- Protein Sequence
- MRCCILCRKKEVKGNGTFFQVPKDVSAREKWSKLCSREFNASTRICIDHFSKADIITTGRRIYLMPKAMPIVQQQSKPLKRNVDMASNNSSLSCPIDSEVTFEPPKAHLQGPRRNIIVAAPKDPENAGFQNQEEISQNVSNVNNNVMPPQLQEEPIIQIPVIKSISCSRSTQTNTRLCGLVETSDFANEFRFNCFYCSEVFPIEKWKKFIIHLKNNHFEAEEAFKESKYVSDDHDYTPLCFPSSITMEAGVENVAVNNKSVPSFLVDPLEPTYNPFESIVLNPTIYYTPDKNKADTQNINNEISSSVSEMPVSGMKNKWGGSKKEQNVCGNKLPNESILTNNESKQKLISSEALNLGDSYQETSTKTALSKSTDVKEMDNTECEEQCESISIGIGYQNSTEISFEYTPSDVVNSLLDSMKNYPVLWQFDGEPFNEDFFEAVEDLCKIINEKWSLNIDNIKMRRSINRILRLYCYLYPNEDVENIHQFTCYYDKLAAFLPSSVSDIAYARCSHCYICYMNDFNLKLHLVEEQKYLEWPYKCEQCKECFRENEEYEFHKRLPHYDKIFTCGPCNKTFFHRNLYSRHIVVSHLKDNNEPDKYKCDMCDKEFPTSSTLRYHKILHGEKKYKCHLCPKSYFENGKLTLHLKSHRKEYDYMCEVCGKGFLLQTNLREHMKMHTGAKVTCNICNLRLRKSSLSRHLRIVHVANIGNVEVTLNGRNHYYRRLIRSKPLRPIQRKSGERNYRCKTCKISFGNYKLIVEHNKKLHSNTPKWPCKMCSTEFSHKLNLKRHYRKKHNLHVIQVFKLVDENEDLDVVLAMETEYLDQLAESLINSKNKLNNVTKSNISPVKSDLLPEHYFEEEKIHSSTIQDEIMEAADNIETQEIQIELMNDFFTDLFKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01174309;
- 90% Identity
- iTF_01174310;
- 80% Identity
- iTF_01174310;