Pfun022286.1
Basic Information
- Insect
- Phania funesta
- Gene Symbol
- -
- Assembly
- GCA_963932375.1
- Location
- OZ010655.1:64361703-64363627[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00022 0.02 16.1 0.6 2 23 308 330 307 330 0.95 2 9 4.4e-06 0.0004 21.4 3.6 1 23 363 386 363 386 0.95 3 9 1.9e-05 0.0017 19.5 4.4 1 23 395 417 395 417 0.98 4 9 0.0003 0.028 15.6 0.8 1 23 423 446 423 446 0.96 5 9 0.04 3.7 9.0 0.2 2 23 451 472 451 472 0.95 6 9 0.0087 0.8 11.1 0.7 2 23 481 503 480 504 0.93 7 9 0.0013 0.12 13.6 0.1 1 23 510 533 510 533 0.96 8 9 2.4e-05 0.0022 19.1 0.1 1 23 539 561 539 561 0.99 9 9 4.2e-05 0.0039 18.3 6.2 1 23 567 590 567 590 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCAACTTCTTTATGTCGTTTGTGCATCTGTGCCTATACCGAGTGTAAAAGTTTATACGATGAATTTGGGCAGGGAAATGAAGTGTATGAAATTACAGTGAAATATTTCGATCCCATGtttcttaATTCACAGCAATACCCTCAACTCTCTATGGTTATATGTATGGAGTGCTGGCATCACATCAATGATTTCCATACTTTTCAACAGTCAGTACTCGATGCTCAAACAAAATTAGATcaagaatttaaacaaattgtaacTAATATTAAACTAGAAGATGATATGGTGCCTGGATCACAACCTATTATTAATACGCAGACCCCGATCGAGCCAGAGTTGTACAATGATGTCTTTAATAATTTGAGTGAGGATATCGAAGAGAAAAATGAGGTCTTTCTACCACTTTTAGATGTGTTGAACATTAAGGATGACAATCCCTTTTCGACGGATGACGAAAAGCCTTTAATTAATAGTTTGCCCAAGAGTGCAAGAAAAAAGCCAAGCAGAAGGCTAAAAAAGAAAGGGGAATCTGTTAAGGACAGTACGCCAGTGAAACGCacaagaaaacaaagaaataagaaTAACACAGAAAGCTTACTACAGACAAAAAGTAGCTTAAAAcgcataataaaaccaaaaaaattagaaaaaaaattgcttgttaCAACAGAAGCTGAAACCGAAAATTCCGCTAAAGACTCTAATGTAAATCATAAATCGGTAAACAATGATCTTGATTCTAATCAGTCATCAAATGACGATGATGATTATTATAATGATCATGACGATAACGATAGTGATAATAACCACCATGTCGATCCGGATGCCTTTGTTTCATCCAATGACAAACAGAAgacaagtaaacagaaaacgCAAGAAATTGATACATTTATTGCAGAATGGAAACAAGTATTGGAGTGTGACCTTTGTAATCAAGCTTTCACAAACTTAACCctattaagaaaacattttagtaCAGAACATCCTAAACAGAAATGTTATGTTTCTTGCTGTCAACGGAAATTAAAACATCGTTTCGATATAGTTGAGCATATACGATACCACATAGACCCAAAtacatttaaatgtaaaatttgtgacAAAGTATCTACTAATAGTCGTAATCTTAATAAGCATATGCATGAAAAGCATACAGCCGAAGGACAAGAGCGTCCTTTTGAATGTTCTATTTGTCAGAAGCGTTTCGCTAAAAAATGCACACTTAAGACGCATATGGAAACGCATGACACAGGCAAAGACTTTAAATGCAGCGAATGTGGAAAGGGCTTTTCAACAGAGCAACGCCGAAAGATTCATGAGCGTATGGTCCACAATGTTGATCGTGTGTGTGATCAATGCGGTAAAACAATACATGGTGTTTATGCCCTTAAGCAACATATACTCGAGCATGCTGGCATTAAAAAACGGAAATGGCCATGTGATCAATGCAATGCTGAATTGAATTCCCGTTCCAGTTTAAAACGGCACAAAACAGTAGCTCATCATGATGGCTCTACAATCTATGTCTGCAGCGAATGTGGTAAAATTGCTCCAACTGAAACGGCTTTGCGTAGCCACAAAAAATATGTCCATCAGGCGGAGCGTAAATTTAAATGCACTATTTGTGACAAGGGCTTCAAGGTTGCCATTGTATTGCGTGAACATATGGCCACGCATACGGGAGAAGATTTATACCAGTGTCCTCATTGCCCAAAGACATTTAAGGTTAATGCCAATATGCATCATCATCGAAAGAAGGCTCACCCCAAGGAATGGAGTGAAGGTCGAATGAATAAGCCAATTATAACAAAAGTTAACGTTAATTTGGTATCGAATGAAGTTGTTATATAA
- Protein Sequence
- MSSTSLCRLCICAYTECKSLYDEFGQGNEVYEITVKYFDPMFLNSQQYPQLSMVICMECWHHINDFHTFQQSVLDAQTKLDQEFKQIVTNIKLEDDMVPGSQPIINTQTPIEPELYNDVFNNLSEDIEEKNEVFLPLLDVLNIKDDNPFSTDDEKPLINSLPKSARKKPSRRLKKKGESVKDSTPVKRTRKQRNKNNTESLLQTKSSLKRIIKPKKLEKKLLVTTEAETENSAKDSNVNHKSVNNDLDSNQSSNDDDDYYNDHDDNDSDNNHHVDPDAFVSSNDKQKTSKQKTQEIDTFIAEWKQVLECDLCNQAFTNLTLLRKHFSTEHPKQKCYVSCCQRKLKHRFDIVEHIRYHIDPNTFKCKICDKVSTNSRNLNKHMHEKHTAEGQERPFECSICQKRFAKKCTLKTHMETHDTGKDFKCSECGKGFSTEQRRKIHERMVHNVDRVCDQCGKTIHGVYALKQHILEHAGIKKRKWPCDQCNAELNSRSSLKRHKTVAHHDGSTIYVCSECGKIAPTETALRSHKKYVHQAERKFKCTICDKGFKVAIVLREHMATHTGEDLYQCPHCPKTFKVNANMHHHRKKAHPKEWSEGRMNKPIITKVNVNLVSNEVVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742179;
- 90% Identity
- -
- 80% Identity
- -