Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.25 3.2e+02 2.2 0.2 19 31 13 25 5 31 0.81

2 8 0.0073 9.1 7.2 1.7 8 39 34 59 27 63 0.74

3 8 0.0041 5.1 8.0 3.6 14 44 65 99 60 99 0.90

4 8 0.016 20 6.0 0.8 18 30 105 117 102 122 0.84

5 8 0.026 32 5.4 0.4 5 30 121 147 119 156 0.78

6 8 0.0057 7.2 7.5 1.0 9 38 155 179 151 179 0.84

7 8 0.035 44 5.0 0.5 13 38 186 208 182 213 0.77

8 8 8.8e-05 0.11 13.3 3.2 13 44 214 242 207 242 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.25	3.2e+02	2.2	0.2	19	31	13	25	5	31	0.81
2	8	0.0073	9.1	7.2	1.7	8	39	34	59	27	63	0.74
3	8	0.0041	5.1	8.0	3.6	14	44	65	99	60	99	0.90
4	8	0.016	20	6.0	0.8	18	30	105	117	102	122	0.84
5	8	0.026	32	5.4	0.4	5	30	121	147	119	156	0.78
6	8	0.0057	7.2	7.5	1.0	9	38	155	179	151	179	0.84
7	8	0.035	44	5.0	0.5	13	38	186	208	182	213	0.77
8	8	8.8e-05	0.11	13.3	3.2	13	44	214	242	207	242	0.87

Coding Sequence: ATGCATCGCTTTGTTCACGAGAAAAATCCAACACCTTGCGAAGTGTGCGGTAAAGTTTTTGAGACCAAACATAGTCTGCGCAAACACAAGTCCTACTGGCATAAGTCCGACTTAAATTTACAGTGTAAATTTTGTGAGAAAGTGTTTCGACAAGAGCGCAATTTGCAAGAACATATGGCTACACATACCGGAGAGCAGCTCTATACTTGTCCCCATTGTCAAAAAGAGTCACGTTCCAAATCAAACATATGCGCCACTATATATCGCTTGCGTAATCATATTGCATCCGTACACAATAATATATATCACCATATTTGCgatatttgtggaaaaaaattcaaatcaaagaCATCCTTTCAAAAGCACTACGACGAACATCAAGGCATTGTTGAACCCCCAGCTCAATGTACAATCTGCGGTGCATGGTTGAAAAATCAACACAGTCTACGTGTACACCATCAAACGCATGAAGACACACAATTCGCCTGCGATATATGTGGTAAGTTCTTCAAGactaaaaagaatttaagtCGACACAAGGGCTATTGGCATCGACGTGAACGAAATCTTTCGTGTAGTTATTGTGACAAGGTGTTTCGTGAAAAACGTAATCTCGACGAGCACATGGCCATGCATACAGATACGAATCTGTACACATGCCCCCACTGCGGAAAAGAGTCAAGATCGAAATCAAATATGTATGTTCATATAAAAAGACAGCATCCAGATGAATGGTGGAAATCGAAACAGGAGCGTTATAAAGTAAAGCCCAATGAAGGAGGGCAAGGAGATGGCGAAGATGCGCTAAGAATCGAGTCATCACAAGTAGACACAACAGTCCCTTCTTATGCACAGGAAtgtataaatgcaaaataa
Protein Sequence: MHRFVHEKNPTPCEVCGKVFETKHSLRKHKSYWHKSDLNLQCKFCEKVFRQERNLQEHMATHTGEQLYTCPHCQKESRSKSNICATIYRLRNHIASVHNNIYHHICDICGKKFKSKTSFQKHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQERYKVKPNEGGQGDGEDALRIESSQVDTTVPSYAQECINAK

Sequence clustering based on sequence similarity using MMseqs2