Pbuc023412.1
Basic Information
- Insect
- Phalera bucephala
- Gene Symbol
- -
- Assembly
- GCA_905147815.1
- Location
- LR990619.1:1880689-1889482[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.2 28 6.9 1.8 2 19 502 519 501 522 0.96 2 11 0.0073 1 11.4 5.2 1 23 539 562 539 562 0.97 3 11 0.013 1.9 10.6 0.3 1 23 567 591 567 591 0.90 4 11 0.0012 0.17 13.9 0.1 2 21 642 661 641 662 0.96 5 11 0.00014 0.02 16.8 0.5 1 23 721 742 721 742 0.97 6 11 0.00016 0.023 16.6 0.5 1 23 748 771 748 771 0.95 7 11 9e-05 0.013 17.4 0.6 2 19 792 809 791 812 0.94 8 11 0.0018 0.26 13.3 1.0 2 23 821 844 821 844 0.97 9 11 1.5 2.1e+02 4.2 7.9 1 21 851 871 851 873 0.94 10 11 0.0069 0.97 11.5 2.1 1 21 879 899 879 904 0.92 11 11 0.014 2 10.5 0.5 1 23 910 933 910 933 0.96
Sequence Information
- Coding Sequence
- ATGCTTTCGCCACGGGAAGATGATGACGACGATAGCCATCTCTGCATCAAATGTAACACTACTATAGTCGGGCTGGACAACTACGTGAAGCACCGAAAACAAAGATGTGGAAAGCTAAAGACACAGGTCTCAAAACCAGACCTTCCCCCCATCGACCCTTTAGAACCTACCTACAGCCTTGGAGCAGACGTATTCTTCCAATCACTGGAACTGCAAAGCAGCGTTAAAAAACCCAGCTCACTTTCCAGGCTAACACCACCGATCCCAATTTCCAAAACCAGCCTAGATAGAAAAAGCTCTTTAGTCGTTCCCTCTACATCCAGAGATATACCAAGGATGAGCCCTTTAGAAACCAACATGAGAGGTGGTGATTGGATAGGAGGCCACAGTTTAAGGATTGGAAGCAACGAAGATAATCAAACGAAACTAATTAACGCCGTTGCGAGTATCAGTGGAACTGTTAAAAAAGACATTCCGACTTCGTCTTATAGTATCAATTATGATTACAAAGGTGATGAAGAGAGTGATGAATCGGAAGAATCTGAAGATGAAGATGAAGAAGATCAAGCTAGTGGAGGAAAATGGAAGCCTCCACCCAACTATACTGGAGGAAAGTGGCGCCCAGCATCACCGGAACACGAAGACTGGGATATGAGGGAAGAACAAGAACATACTGGAGGTAAATGGAAACCAATCATACCAGATGCACGAGACGAAGATTATGATGCACCCCCACCCGGCCATACCAAAGGTAAATGGGTTCCGGGAGCGAACGAAAAGACGCAAATAATGCAGACGACAGTACAGACAAAAGGAGCAGTCCAGTACTGGTGCGGCCCATGCAACAGAAGATTAGGGTCAAGAGCAATTTACGACAAGCATTTAAGATCCAGTTTACATTTGAAGAAAGTACTCCCAGAACACGAGTTGGAATTCTCGGGGCATTTGGAACCTATGAAAAGCATAGACAAACGTATGACGCGACCATCTAGGTTCGTCAATGATGATATTTACTCGCAAGTAGAGAAAAAAAGACAAAGAAAATCTGGAAGCAAGTTGAGTATCAAAATCGAgaagaaaaaaaggaaaagaaaaccCAATTTCGTTCATTGTCCTGGCTGCAAATCTCGAGTAAGACAACACCTAATGGGGAAGCACTTGATTTCTCATTATCACTTCAGAAAAGCGACAAATACAAACACTGATACATACCGACAACTAATCTTGGACAATATAGATGCAATAGTCCATCAGTCTCCTTTTCAATGTAGTCCCTGTAAATTCTACACCAACTGGCTGTCTACGTTTATGCAACATTGGTTCTCCGAGGAGCATGAGCATAGAATGTCATCAATCGAAGGCAGATTTTGGTGTTCTTTCTGCAAATTCGAATGCGAATCATCTCAAGAGATGCTTCAGCATATATCCAGCTCAGATCACAGTGAAGTTGTTGCCGTCATTAACAGGTCCATGCCTATAATCATCAGAAAGAGAACAGTATTGAAGTGCGAGAGCTGCTATAAAGAATTTCGATACAACGTTGAGATGAAACGACATTGCCAAGAAACTGGACATTCATTGGCGTATACAGCAACCGACAATTACCAGGAACTACATAAATGCCAGCATTGTAAAGCAAAGTTTAAATCTTCTCTTACCCTTGCTGCCCATTTAAAATCGAAGCACAAACAGAGAGCATACCTTTGTCTCGTTTGCGCAAAGGCTTTTAATACATCTGAAGAAGCGAAACGGCATCGGCAAACGTCTGAGCATAGGATCAAAAGGAAGGAAAATTTAAGGGACCAAGGTATACCGACGAAGGATTTGAGCAAGAAATGCCCTTACTGCACAGAAAATGTGATATTGAGAAATATTTTGGTGTTGAAAGACCATATACGACGCATTCATCCGGATATAAGAAAAAAATGCCCAAAATGCGGCATGTCCTTCATTCTATCCCAAGAAGTGACCCGTCACATCAGAGACAACGCCTGCCAGTTCCAAACAACGTCTCAAGTCAATGCATCTATCTTCTGGAGCTGCAGCCAGTGTCTCTTCACCACCGACTCCCAAGCCGAGTGCTTCTTCCACGAGGTCCTTCACTCCACACCACAAAAAGAAACCGTAAAACAAGGGGACGTCGAGAAAACAGTCATAAAATACCCGTGTCCTCTATGCCCAAGGAGTTTTAAGAAACCATCCTTGAGACAACACCTAAGGCAGCATACTTTTGAGAGGCCGTTCATTTGTTCGACTTGTGGAGCCAATTTCACAAGGCAGACGAGTCTTGCGAACCATTCCAGAAACGAGCATGGAACTGAGGTGACCAAGATACCGAAGTTGCCCGCAATCGTGGAGAGCAACGAAGACTGGGAGTGTGAGAAGTGTAAGAAGAGGTTTAGTAGCAAATCAGCCCTCAGTCGTCACGGTAGCAACTGCACTAGCAATGCTAATGTGCGGCAGTGTCCTCACGACCAATGCACATTCGTCGCCAGTAATCCTAGCCAATTAGCGAGgcaTCGTAGAACTCACGGAGAGCGAATAAAACATCATGAATGTCACTTATGTTCATTCAAAAGTGACCAGGCGAGTCATATGAAACGGCACATGATGTGCCACGAGGGAGCGAAACCATACGCATGTCCCCATTGTCAATTTACATGCGGAAGCTTGGAGAATCTTCGCAAGCACGTTCTTCGCAGTGGTCGACATCCAGGATTATTTCTTTACCACTGCCGACTTTGTCCTTACAATACGAACACAGCAACTGAACTTCGTGTTCACCTTATTTCTGCACATGCCCATAAGTATAATGCGCAGACCGCTGTTCAAGCTGTGAAAAAGCATTTAatggttaataaaataaattaa
- Protein Sequence
- MLSPREDDDDDSHLCIKCNTTIVGLDNYVKHRKQRCGKLKTQVSKPDLPPIDPLEPTYSLGADVFFQSLELQSSVKKPSSLSRLTPPIPISKTSLDRKSSLVVPSTSRDIPRMSPLETNMRGGDWIGGHSLRIGSNEDNQTKLINAVASISGTVKKDIPTSSYSINYDYKGDEESDESEESEDEDEEDQASGGKWKPPPNYTGGKWRPASPEHEDWDMREEQEHTGGKWKPIIPDARDEDYDAPPPGHTKGKWVPGANEKTQIMQTTVQTKGAVQYWCGPCNRRLGSRAIYDKHLRSSLHLKKVLPEHELEFSGHLEPMKSIDKRMTRPSRFVNDDIYSQVEKKRQRKSGSKLSIKIEKKKRKRKPNFVHCPGCKSRVRQHLMGKHLISHYHFRKATNTNTDTYRQLILDNIDAIVHQSPFQCSPCKFYTNWLSTFMQHWFSEEHEHRMSSIEGRFWCSFCKFECESSQEMLQHISSSDHSEVVAVINRSMPIIIRKRTVLKCESCYKEFRYNVEMKRHCQETGHSLAYTATDNYQELHKCQHCKAKFKSSLTLAAHLKSKHKQRAYLCLVCAKAFNTSEEAKRHRQTSEHRIKRKENLRDQGIPTKDLSKKCPYCTENVILRNILVLKDHIRRIHPDIRKKCPKCGMSFILSQEVTRHIRDNACQFQTTSQVNASIFWSCSQCLFTTDSQAECFFHEVLHSTPQKETVKQGDVEKTVIKYPCPLCPRSFKKPSLRQHLRQHTFERPFICSTCGANFTRQTSLANHSRNEHGTEVTKIPKLPAIVESNEDWECEKCKKRFSSKSALSRHGSNCTSNANVRQCPHDQCTFVASNPSQLARHRRTHGERIKHHECHLCSFKSDQASHMKRHMMCHEGAKPYACPHCQFTCGSLENLRKHVLRSGRHPGLFLYHCRLCPYNTNTATELRVHLISAHAHKYNAQTAVQAVKKHLMVNKIN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00112131;
- 90% Identity
- -
- 80% Identity
- -