Pbuc040119.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phalera bucephala
Gene Symbol
-
Assembly
GCA_905147815.1
Location
LR990631.1:3125150-3151247[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00063 0.089 14.8 1.4 1 23 291 314 291 314 0.94
2 10 0.00013 0.018 16.9 6.4 2 23 322 343 322 343 0.97
3 10 9.3 1.3e+03 1.7 1.5 1 20 347 366 347 369 0.79
4 10 6.7e-05 0.0094 17.8 5.3 2 23 375 396 375 396 0.98
5 10 0.0021 0.29 13.1 0.6 1 23 400 423 400 423 0.96
6 10 0.04 5.7 9.1 0.3 2 20 437 455 436 457 0.94
7 10 0.025 3.5 9.7 4.3 3 23 493 514 491 514 0.95
8 10 0.17 24 7.1 0.1 1 23 526 547 526 547 0.95
9 10 5.8e-05 0.0081 18.0 0.4 1 23 553 575 553 575 0.98
10 10 0.00052 0.073 15.0 2.9 3 23 583 604 582 604 0.97

Sequence Information

Coding Sequence
ATGTCGAAACTGGAAGTGTGTCGGATTTGTTTGAATACAAATGTGAAAGTGTATCACTACAACAAGTATCATCTCAAGGAATATTATGAACAAGTTATGGCTGTTAAAGTGAGTGATAGAGATGGTCTGCCCTGCCACTTCTGTTATGAATGCTCTGCGATGCTGCACAAGTTTCACAAGTTTAAAGAGAAATGCTACAGTGGATTGAAAGTGCTCAGAGGAATACTCTGGAAGGGACCTATAACATTAAAATCAATAGCAGATACAGACAGAAAGAAGTTAAATCTGCAATCCACAATAGATATCTTAAGAGTTAACCGCAGAGTCAAGACTTGCAATGCAAGATCATCTAAAGACAGACCAGTTAGGCCCGAAAGCCCAGAACATGTTGTAGTGGACACTCAAAATGATGgcattgatgatgatgacaatgtGATGGATGATGAATCAGAACTTGATTTGAAGGTAGAAACAAgaaatgatgatgaagatattgTAATTGATCACCCTGAACCAGAACAGACGGAAGCCAAAGATGAAGTAATTTTTCCAGAAAAAGTATTAATAGATGAATTGAAAACGAATAGGACTAACATGCTGTCAAAAATGGATAAAATGTTGACAGAATCAAATACAGATACAGCAAAAGATGACACAGATAATAATACAAAGAGAGGAAAAGATGTCAAAggtaataagaataaaaaaaaagttgatgGTAAAGAGAAGAAAGCTAAACAGTTTGAGGTGAAGGATAAAAGGTATGCAGAATTCGATCCCAAGTACTggttgaaaattaattttactgaAGAAGAAGCGGAGGAAGAGTTTAAAGCTAGAGGGCAGCACAAGAGGTACTTGGCTGCGGAATTTAAGTGCACGGATTGTTTAAAAGATTTCTCTAAAGAAGATATGCTGATCAGGCATAATAAGTTAAGGCATGAtttgTCCTTGGGTCGGGAAGAATGTCGCTTCTGTCACATGAGGTTCAAGCGAAAGTCCTTGCTGAGAAGACACATGAAACAACATTACATTAGATATAAATGCTTGCGGTGTGGCATGGTCTGCCCGGCAGAATCAACAGCACACTCCCACGAGGAATTCCACAGCGGCGTTGTTAGAAAATGCGAACATTGCGGCGAAGAGTTTAAGCACTCGTCTACGTACTACACGCACTTGCGCACGCACCGCAGCGAGCACGTGTGTACTCTGTGCGGAGCGTCCTTCGTCAGCGAGTTGGGACTTCGCCAACATAAGAAGATTAAGCACATCAAATCAGAGAGCGAAACCCCAAAAGACGAGGACACGTACTGCGAGCTGTGCGACATCAAGTTCGAGACGCGGAAAGCGTTCGAAGAGCATTTGGTGCACTCCGCAAAACATGTGCCAGAAGAGATGGAAGTTCCAATGTCAAAGCAAACGAGTTCAAGGAAACGCAAAAGATTATTATACAGAGAACGGCGAAAACCCACCGACTGTAATATTTGCGGGAAACACTTCGAAACGCAAACGGCGTGTAGAGCTCATCACCAGGTGGAACACCGAGGCTCTTCGTTCTACGGGCCCAGTGATAGGCACATCTGTGAAGTGTGCGGGATGTCCTTGGCTccTAGCAGTATCACGAGTCATATGAACATCCACACAAGAGAAAACCTCTTCACGTGCAAGACCTGCGGGAAGCAGTTCGTCAACAGAGGAGTCATGTGGGCCCATGAAAGGACCCACAGCAACGAAAAATTAGTGGCTTGTACGCTGTGTGACAAGCGGTTCAAACAGCCCAGAAGTATGCGCGTCCACTATCACACCTTCCATCTTAAGGAGCCATACCCGAAAAGGAGCAAAAAGAAACAACCCGGAGAGACATCGAATATGAATGACTACGCACGCGTCGAGTCGGAAGAGGATATGCCGCTGAATAGATGGATACtatcataa
Protein Sequence
MSKLEVCRICLNTNVKVYHYNKYHLKEYYEQVMAVKVSDRDGLPCHFCYECSAMLHKFHKFKEKCYSGLKVLRGILWKGPITLKSIADTDRKKLNLQSTIDILRVNRRVKTCNARSSKDRPVRPESPEHVVVDTQNDGIDDDDNVMDDESELDLKVETRNDDEDIVIDHPEPEQTEAKDEVIFPEKVLIDELKTNRTNMLSKMDKMLTESNTDTAKDDTDNNTKRGKDVKGNKNKKKVDGKEKKAKQFEVKDKRYAEFDPKYWLKINFTEEEAEEEFKARGQHKRYLAAEFKCTDCLKDFSKEDMLIRHNKLRHDLSLGREECRFCHMRFKRKSLLRRHMKQHYIRYKCLRCGMVCPAESTAHSHEEFHSGVVRKCEHCGEEFKHSSTYYTHLRTHRSEHVCTLCGASFVSELGLRQHKKIKHIKSESETPKDEDTYCELCDIKFETRKAFEEHLVHSAKHVPEEMEVPMSKQTSSRKRKRLLYRERRKPTDCNICGKHFETQTACRAHHQVEHRGSSFYGPSDRHICEVCGMSLAPSSITSHMNIHTRENLFTCKTCGKQFVNRGVMWAHERTHSNEKLVACTLCDKRFKQPRSMRVHYHTFHLKEPYPKRSKKKQPGETSNMNDYARVESEEDMPLNRWILS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-