Pbuc043215.1
Basic Information
- Insect
- Phalera bucephala
- Gene Symbol
- -
- Assembly
- GCA_905147815.1
- Location
- LR990634.1:16829313-16832968[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.2 1.7e+02 4.4 0.5 1 23 114 136 114 136 0.97 2 16 0.024 3.3 9.8 2.4 1 23 188 211 188 211 0.95 3 16 0.92 1.3e+02 4.8 1.0 2 23 271 293 271 293 0.91 4 16 0.0059 0.83 11.7 2.1 1 23 299 322 299 322 0.95 5 16 0.0019 0.27 13.2 0.6 1 21 326 346 326 347 0.94 6 16 0.00014 0.02 16.8 1.1 1 23 355 378 355 378 0.97 7 16 0.016 2.2 10.4 1.4 1 23 383 406 383 406 0.95 8 16 1.1e-05 0.0015 20.3 0.8 2 23 419 440 418 440 0.97 9 16 0.0028 0.39 12.7 1.2 1 23 446 468 446 468 0.98 10 16 0.099 14 7.9 2.3 2 23 474 494 474 494 0.97 11 16 3.5e-05 0.005 18.7 0.6 2 23 500 521 499 521 0.97 12 16 0.77 1.1e+02 5.1 0.1 2 23 526 546 525 546 0.91 13 16 5.5e-05 0.0077 18.1 3.4 1 23 593 615 593 615 0.98 14 16 0.003 0.42 12.6 1.7 3 23 623 643 622 643 0.97 15 16 0.049 6.9 8.8 0.8 1 23 649 672 649 672 0.93 16 16 0.052 7.2 8.7 0.1 3 23 679 700 678 700 0.95
Sequence Information
- Coding Sequence
- ATGGAAGTTATCGAAGTTGTGTTTAGTAATATTGGCAACATCCTCACAAATCCACAAATATGCGCCCAGTGTACAGAAAACCTACTCCAGTCatatattttcatacaaaactCTATAGAGACAACCAAAATTATCATAAACTATGTACAAGACATGTACTGTAAGGCagctgatataaataaattattaaaccaATCAACTATTGAAAGCTCAAATATAGTGATAgtattagaaaataattttacagaCAATTATCTTGATAAGACAGAAGCTgcaacattaaaaaaagaaaataacatagACAATGAAGAAACAGATTTAAAAACTATGCATTCCATTTTCAAATGTGTCAGTTGTAATATCAAACTACCCACATATAAATTATGGCGGGAACACAAATTAGTGCATAAAAAGAAATTGCAGTGTTTAAAGAATTTTAAGAATGATCAAATATTAAATGATCACTATAAAATACATTCAGCAGTTAAAGGTAAGGTTTGTGGAGAAATAATCACAGATGAAAAACTTACAGAGCATTTAGGAATGAGGCATGAAGAATTGCACATATGTGGGGTATGTAATACAGTATATTATTCATTAAATTCCCTTCAAACTCATGAGAAGATTTGTCACGTATCAAGAAATGAAACAGGGACAAAATGTCTTATGTGTCTTAAGCCCCTCAAAGATGTCGAGCTGGAAACGCACAAATGTAAGTTTGCCTGTCCCGAATGCAATCTTATGCCGTGCATTCATTataaatacttaatttattaCCGTGAGCAGATTCTGAACGACGTATTACAAGCTAAATGTTTAGACTGCGATTATGTTTGTAGAAAAAAAGAGATATTATTAGGACACGTGAACAGAGAACATTTGAATCATCACCCGTACACCTGTGATAAATGCGGACAACAATTCTATTCTAAAGTCATTTTAAAAGCACATATACATAATTTCCATCAAGAATTttacgtatgtgaattttgtgatAAGGAATTCAGTAATGTGTCTACTTATTTGTCCCATAAAAAAGACTGTGGGATTAATAAAAGGAATTTTTCTTGTGATAAGTGTGAAGCATCATTTAATACTAAAGATCTTTTAGTAGAACATAAAAGAAGGAAACATAGCAAAGATGTATTCCCATGTGGATTGTGCAACAAGAAATTCTTTAAAGAATCCAAACGGAAAGAGCATATGGTGAAAGTACACAGCGGATCACGAAAAACAAACAGATTTATTAATACAGAATGCGTTATTTGCTTAAAGACATTCAAGACAAAGGCTGATCTATTCCAACACATAAAAACTCATGGACCTaatactaaatacccatgcAGAATTTGCAACACCGAATATGACACTTTAAGGCAATTTAGAGCTCATAATCGTAAACACTTAGGTCCTTTTGCTACTTGTCACGTCTGCGGTCAAGAAATGAGGCAAATACTACTCAAAAAACACATGACTACTCACGAAGATCCAATCGTGACGTGTGAAACTTGTGGCAAATCCTTCCAAAACACTGCTTTGCTGAAATACCATCAGAAAGTGCATTTAGCAAGCATACCATGCCCTAAATGCAAGAAACTTATCAACCCAGCCCGATTAAGAAGGCATTGGAAAGCACACCTAATAGATGAAGATCCAGAGTTGAAAAACGCTCGAAAGCAGACACCGAACTTAAAATGCAAGCAATGCGACTATAAAACATGGAATAACATACTTTTAGAGTGTCATATGAATAGACACCATTTGAAAATCAAGCCTTATGTCTGTCATATATGCAGCAAAGATTTTATAGGCAAGCATCTGTTGAAGAAACACTTGGAGACTCATAGTGTAGACAAGAATGTTCTTTGCATGGTTTGTCTTAAGAGTTTCGCTAATTCTGCTTGTTTGAAAATGCATTTGCGTCTTCATACCGGTGAAAGACCTTTTACTTGTGAAATTTGTGGCGATAGATTCAGGTCTTCAAGTATAATGAACGTACATAAGCTTAAAAAGCATTCGGATAAGAGTAATGCGTGTCCCTTATGCGCTAATAAGTTCTATACTGTTAGGGATCTAAGGAGGCATGTTATAAAGGTCCATTGGAAACAGAAGAAGCCGTTTGATCCTAGAGAGCTCAAAGGATTGGAGAAAGAACATTATCATCTGTTTCATGATGGGAGGAGAGTGAAGGTTGCTGAGGAAGATGTTGATTTTTATATGCCTTCTTAA
- Protein Sequence
- MEVIEVVFSNIGNILTNPQICAQCTENLLQSYIFIQNSIETTKIIINYVQDMYCKAADINKLLNQSTIESSNIVIVLENNFTDNYLDKTEAATLKKENNIDNEETDLKTMHSIFKCVSCNIKLPTYKLWREHKLVHKKKLQCLKNFKNDQILNDHYKIHSAVKGKVCGEIITDEKLTEHLGMRHEELHICGVCNTVYYSLNSLQTHEKICHVSRNETGTKCLMCLKPLKDVELETHKCKFACPECNLMPCIHYKYLIYYREQILNDVLQAKCLDCDYVCRKKEILLGHVNREHLNHHPYTCDKCGQQFYSKVILKAHIHNFHQEFYVCEFCDKEFSNVSTYLSHKKDCGINKRNFSCDKCEASFNTKDLLVEHKRRKHSKDVFPCGLCNKKFFKESKRKEHMVKVHSGSRKTNRFINTECVICLKTFKTKADLFQHIKTHGPNTKYPCRICNTEYDTLRQFRAHNRKHLGPFATCHVCGQEMRQILLKKHMTTHEDPIVTCETCGKSFQNTALLKYHQKVHLASIPCPKCKKLINPARLRRHWKAHLIDEDPELKNARKQTPNLKCKQCDYKTWNNILLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHLETHSVDKNVLCMVCLKSFANSACLKMHLRLHTGERPFTCEICGDRFRSSSIMNVHKLKKHSDKSNACPLCANKFYTVRDLRRHVIKVHWKQKKPFDPRELKGLEKEHYHLFHDGRRVKVAEEDVDFYMPS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -