Pbuc039603.1
Basic Information
- Insect
- Phalera bucephala
- Gene Symbol
- -
- Assembly
- GCA_905147815.1
- Location
- LR990630.1:12873706-12894143[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0053 0.74 11.9 6.1 1 23 261 283 261 283 0.98 2 13 0.0012 0.17 13.8 0.8 3 23 293 314 291 314 0.96 3 13 0.82 1.2e+02 5.0 0.3 1 23 318 341 318 341 0.90 4 13 0.0011 0.16 14.0 4.9 1 23 416 438 416 438 0.99 5 13 0.00022 0.031 16.2 2.3 2 23 447 469 446 469 0.97 6 13 0.14 20 7.4 2.8 1 23 473 495 473 495 0.98 7 13 4.5e-05 0.0063 18.4 3.0 1 23 500 523 500 523 0.98 8 13 0.58 82 5.4 1.7 3 23 529 550 528 550 0.86 9 13 2.9 4.1e+02 3.2 0.2 1 20 569 588 569 590 0.90 10 13 3.2 4.5e+02 3.1 0.1 3 23 637 658 635 658 0.90 11 13 5e-06 0.00071 21.4 0.7 1 23 667 689 667 689 0.98 12 13 0.005 0.7 11.9 0.3 3 23 697 717 695 717 0.96 13 13 5.5e-06 0.00077 21.3 2.6 1 23 723 746 723 746 0.98
Sequence Information
- Coding Sequence
- ATGTATTACCTAAAAGCGTGTGCTGTGTGTTTAAGTACCGATGTAAAGTTACATAATATGAGTACCAACAATCTAAGGCTAGAATACAATTTAGTTTCCGGGATTCAGACGTCTAGTGGTAATGGAATGCCAgattatttatgttttctttGCACCGCCTACGTGAGACGCTTCAAAAAATTTCGTGATAAATGCCAACGTACACATTATGCCCTACAAGAGATTCTACAAAGGAACAAAGAGATCAAAGAGTGCCATTTAAAGGATTTAAATTGTGAATATCTGGatataaaaccatttttatCATACATAGATCCCAGTACTAGCCACTATGACGAAACCAAATTTCAGTGGACCAAATTAAACCGAAGTGGTGTCAAAGGAGACAAAATCCCAACAGTGCACTGCAGTACACTGACCTCGAATGACACTTTTGAAAATGTAGCAAATAACGAAAGTGAATATGAAGAAAAACCTATTAAAAGAGATGTTGATGATTATGAAAAGAATCAAGATCTCGATTTGGATAATAAAGATGAAAATTTAGTTCCTTCAACTTCAAACATAGAATTTACCGATTCTTTTCTGGATAATGATAATAGTTGTGATAGCATTGGCCCAGATATAGACAACTCCCATGGCACATCGTATGATTTGAAAAATGATGACAATAATGTGGACGGTTCAAATTTGGATGAAGAATACGCAACTATGGTAGCAATATCTGTGAAAGAGGCGAAGGCTGCTTTGGAAGTATACAAAATGTTCAGCAATGGTAGATATCATTGCAATAAATGTCATAAGGCCTATTTTAATGAGAATCGTTTAAAGGTACATTTACGTATGCATGAGAAGCATATCAGCGGTAACTTTGGTTGTGACCTCTGTGGCTACTACTATAAAACTGAATTTCTATTGAAGACTCATATGAGAGATAAGCAcatgtacaaatatttgtgcaagAAGTGTCCAGAAGTCAGTTTCGATAGAACTTCCGCGAAACAACACTACATCTGGATTCACCTAAAAAAAGGAGATAGAAAGTATGCCAACTGGTACGACACACGACCGACTTGGTTGAGCACTAAAGGCGGCAAAAGGGCCAAGGGGGTGGTGTCCTTAAGGCCCGTAAGGAAACTGAGGAAGACGCCGACAGACTTCCTCACGTACGCGCCCATCGATCACGAGGAGCAGTATGAACTGGTGATGGAGAGACAGAAATCTAGAAATTATAAGGAGGCTAAATACAAATGCCATTTGTGCTTTAGGGGGTTCAGGGAAATGGATACATACAATAATCACATGAGGAAGCATGACCCGGCAATCGCCGGTCCATTACAATGTGACATGTGCAAACTATACTTCAGAGACCAGCGCAAGTTGTACAAGCACATGAATACCACACACCTCGCCAAGTACTCCTGTCGGATGTGCAGCTATGTCTGTTATAATAGgGGTCAAGCGCAAATGCATTACAGGTGGcataaaaatgtaacatatcAGTGTCCGCATTGTGAAAGAGTATTCAAAAAGTCTTCAACTCGATTGACGCACATAAGGATAAAGCATCCGTCTATGAATATCTGCAACTTATGTGGACACAGCTTCGTCAGTGAAACGGGCCTGTACTGTCACAAGCAAATAGTTCACAGTAAAGAGGAGATAGAAATAAGCGACAATATAAAATCGGATACATCGGACCCGTACTTCTGTGCGGACTGCAATATGCAGTTCTTGAACGAAAACGCTTTCACTACGCATCTCGGCAGCTCGTACAAACACGCAACTACGAACTTGTCGATAAAGCCGTCGCGCAAGGTGAAGCCCGAGGAGAGCCGCAAGCGCGGGCGGCCGCGCCGGGGGAACCACTCTGACGTCATCAACAACGGCGTCAGCACCGCCACCAACTGCGAAGTGTGCGGCGAGTACCTGGCCAACGACGTTCAAGCGCGGAAGCACTACCAGGCGGAACACCCCGGTACTGAATACCTCAAGCGGTACATGTGTGACGTCTGCGGACATGCCACGAAGCAATATGCCAACTTGATGGTGCACATGAGAACGCACACCAACGAGAAGCCTTATGGATGTCTGCTGTGTGATCGACGGTTTAGCATGCCCAGCAACAGGGACCGGCATATGGTGGTGCACACAGGCGAAAAGCGATACCAATGCCAACACTGCAATCGCCGATTTACACAAAGCAGTGCCGTGAAACTGCACATACAAACAGTCCACCTGAAGATCCCGTACGCGCCCTGGGACAAGAAGAACAGGAAACGCCGCAAGGAGGCTGAAGCTGCAGCTAACTTCGCCAACACAGTGGCGACAGAGTTACAACCTCCACAGAGAAAAGTGATGTTTGAAACGCAAGGGGATTATTTGAACGCGTACATATCGTACAATGATGAGTGA
- Protein Sequence
- MYYLKACAVCLSTDVKLHNMSTNNLRLEYNLVSGIQTSSGNGMPDYLCFLCTAYVRRFKKFRDKCQRTHYALQEILQRNKEIKECHLKDLNCEYLDIKPFLSYIDPSTSHYDETKFQWTKLNRSGVKGDKIPTVHCSTLTSNDTFENVANNESEYEEKPIKRDVDDYEKNQDLDLDNKDENLVPSTSNIEFTDSFLDNDNSCDSIGPDIDNSHGTSYDLKNDDNNVDGSNLDEEYATMVAISVKEAKAALEVYKMFSNGRYHCNKCHKAYFNENRLKVHLRMHEKHISGNFGCDLCGYYYKTEFLLKTHMRDKHMYKYLCKKCPEVSFDRTSAKQHYIWIHLKKGDRKYANWYDTRPTWLSTKGGKRAKGVVSLRPVRKLRKTPTDFLTYAPIDHEEQYELVMERQKSRNYKEAKYKCHLCFRGFREMDTYNNHMRKHDPAIAGPLQCDMCKLYFRDQRKLYKHMNTTHLAKYSCRMCSYVCYNRGQAQMHYRWHKNVTYQCPHCERVFKKSSTRLTHIRIKHPSMNICNLCGHSFVSETGLYCHKQIVHSKEEIEISDNIKSDTSDPYFCADCNMQFLNENAFTTHLGSSYKHATTNLSIKPSRKVKPEESRKRGRPRRGNHSDVINNGVSTATNCEVCGEYLANDVQARKHYQAEHPGTEYLKRYMCDVCGHATKQYANLMVHMRTHTNEKPYGCLLCDRRFSMPSNRDRHMVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKEAEAAANFANTVATELQPPQRKVMFETQGDYLNAYISYNDE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -