Pbuc004499.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phalera bucephala
Gene Symbol
RTase
Assembly
GCA_905147815.1
Location
LR990609.1:27984134-28028283[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0074 1 11.4 5.9 1 23 392 414 392 414 0.98
2 11 4e-05 0.0057 18.5 0.2 1 23 420 442 420 442 0.98
3 11 0.00011 0.015 17.2 1.7 1 23 448 471 448 471 0.96
4 11 0.046 6.4 8.9 3.3 1 21 477 497 477 499 0.95
5 11 0.00016 0.023 16.6 2.7 1 23 505 527 505 527 0.99
6 11 4.5e-05 0.0063 18.4 5.5 1 23 533 555 533 555 0.98
7 11 0.005 0.7 11.9 0.9 1 23 563 586 563 586 0.97
8 11 0.027 3.8 9.6 4.3 2 23 593 614 592 614 0.96
9 11 0.00021 0.029 16.3 1.9 1 23 620 642 620 642 0.98
10 11 9.2e-06 0.0013 20.6 2.3 1 23 648 671 648 671 0.96
11 11 1.6e-05 0.0022 19.8 4.7 1 23 685 707 685 707 0.96

Sequence Information

Coding Sequence
ATGCTCGGCCCGCGGAGTATCAAAGTGCAGTTGGGCGACGGGGAGAGTAGATTCCATCTGCTCAAAAACGGCTTACCACAGGGTTCGGTGCTTGCTCCCCTGTTGTTTAATGTATACATTAGCGACATGCCGTGCACTCAGTCCGAAAAATTTATGTATGCCGATGACCTGGCACTAGCACACCAGGGGAAGACATTTGAGGAGGGAGAAATCACACTATCGCAGGATCTTTGGGAGATGAACGCGTACTATACCAAATGGAGGCTATGCCCTAACCCTTCCAAAACTGAGGTAAACGCTTTTCATCTCTCAAACAGTTTGGCTCAGAGGAAGCTCAACGTAACATTCTGCGGGAAAAAGGTCAACCACAACTTCTGTCCTAAATACCTGGGGGTCATCCTTGACCGCTCTCTTACCTTCCGCGATCACCTGGAAGATACTTCCCAAAAATTGAAGACACGAGCCAATCTCATAGGTCGCCTAGCGGGCACATCTTGGGGCGCTCGTGCTGACGTCCTGCGTACTTCTGCACTTGCACTGGCCTACCCTACTGCTGAATACTGTGCTCCGGTGTGGTATCATAGTGCACATACTAGTAAGGTGGACGTACAGCTAAACAGAGTGATGCGAGTAATTACCGTCATGGCCCCTCCAATAAAAAAGGAGAAGACCAAACAAACACTCATCCAGTCTTACTTGAATCAAGGGGCTGCCGTTATTGCAGTCAATGGAACTGGTGAAGAAGAGAGTGATGCAGGGGTGACGTACTTCGTGGATGAGGAGGGCAGGTACTACTACCAGCCTGCCGGAGACAACCAGAACCTGGTATCCTTGCCTGCAGGGACAGTGGCCGAAGCAAGTGAGGAGATGGGGGAAGAGGAGCAAATGATGGTGGAGGCCGAGGGCGAGGGGTACGAGACCGTGACCTTGGTGCCCTCGGAGTCCAGCACTGGCGAGGTGAGCTACGTGCTCGTCGTGCAGGAGGAGAACAAGCCCGTCGTCAACCTCGACATTGACATGACCGAGGAGGATAAGGGCAATGAAGACGTGTACAATTTCGAAGACGAAGAAGAGGCAGAGGCTTCAGAGGCCTCCGAGGAGAATGTGATGAAGGTTGACAGGAAGATGCGGCCTATTGTGGCCAAGCAGCGGCCCAAGTATGTCCGGCCAAATTTCACATGCAACTTCTGCTCGTACACCAGCCACAGGCGGTATCTTTTGCTCCGCCACATGAAGTCTCACTCTGAGGAGCGTCCGTTCAAATGCAACGTGTGCGAGCGCGGGTTCAAGACCATCGCGGCGCTGCAGAACCACGTCAACATGCACAACGGCGTCAAGCCGCACGTCTGCAAGTACTGCAACAGTCCGTTCACCACCTCCGGCGAGCTGGTGCGGCACGTCCGCTACAAGCACACGCACGAGAAGCCGCACAAGTGCACGGAGTGCGACTACGCCTCCGTCGAGCTGTCCAAGCTGCGCCGCCACGTGCGCTGCCACACCGGGGAGAGACCCTACCAGTGTCCGCACTGCACGTACGCGTCGCCGGACACGTTCAAGCTGAAGCGCCACCTGCGCACGCACACGGGCGAGAAGCCCTACAAGTGCGAGCACTGCAACATGTGCTTCACGCAGTCCAACTCGCTCAAGGCGCACAAGCTCATACACAACGTATCGCAAAAGCCGGTGTACTCGTGCGAGCTGTGCCCCGCCAAGTGCGGGCGCAAGACGGACCTGCGGATTCACGTGCAGAAGCTGCACACCTCCGATAAGCCGCTCAAGTGTCGCCGCTGCGGCAAGTCCTTCCCCGACAGATACTCATGCAAAGTTCACAATAAGACGCACGAGGGCGAGAAGTGCTTCAAGTGCGAGCTGTGCCCGTACGCGTCGACGACGCTGCGTCACCTGAACTCGCATATGCTCAAGCACACGGACGAGAAACCGTTCGTGTGCGACCAGTGCAACCAGTCCTTCAGgcaAAAGCAGTTGCTCAGGCGTCACCAAAATCTCTACCACAATCCCAACTACGTGCCCAAGCCGCCCAAAGAAAAGACGCACTCGTGTCATGAGTGCAAGAGGACGTTCGCGCACAAAGGCAACCTCATCCGCCACCTCGCCATCCACGACCCGGACTCTGGGCACCACGAGAGAGCGCTGGCATTGAAGCTAGGCCGTCAGAGGAAAGTCAAGTACATTGAGGACCAGATCATTAAGGATATGGATCCTGAGGCCGAGGACCAGTCTGAGCTGGTGAAGATCTCCGGGCTCGGCAACAAGGAGCTGAAGCGCGGGGAGTTTGTGACGGTGGCCGACGGCGACGGCCAGCAGTACGTGGTACTGGAGGTGATCCAGCTGGAAGACGGCACGGAACAGCAGGTCGCCGTCGTGGCCCCTGACTACCTCGAAGACGAGGAGGCTGaagaagaagaggaagaagaagaagacgatgAGCCACTAGAGAAGAAGTTCAAGCACCAGGAGAGGGAGCCCGCCGCTACCAGGAGCATCAAACTGGAAAAGGAGGTTGACACCTGTTTTGGCTTCGACGAGGAAGAAGACGCAGAAGATGACGATTTTAATGATAAACTCGTGTTGCGCCTAGTTTAG
Protein Sequence
MLGPRSIKVQLGDGESRFHLLKNGLPQGSVLAPLLFNVYISDMPCTQSEKFMYADDLALAHQGKTFEEGEITLSQDLWEMNAYYTKWRLCPNPSKTEVNAFHLSNSLAQRKLNVTFCGKKVNHNFCPKYLGVILDRSLTFRDHLEDTSQKLKTRANLIGRLAGTSWGARADVLRTSALALAYPTAEYCAPVWYHSAHTSKVDVQLNRVMRVITVMAPPIKKEKTKQTLIQSYLNQGAAVIAVNGTGEEESDAGVTYFVDEEGRYYYQPAGDNQNLVSLPAGTVAEASEEMGEEEQMMVEAEGEGYETVTLVPSESSTGEVSYVLVVQEENKPVVNLDIDMTEEDKGNEDVYNFEDEEEAEASEASEENVMKVDRKMRPIVAKQRPKYVRPNFTCNFCSYTSHRRYLLLRHMKSHSEERPFKCNVCERGFKTIAALQNHVNMHNGVKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHKLIHNVSQKPVYSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCFKCELCPYASTTLRHLNSHMLKHTDEKPFVCDQCNQSFRQKQLLRRHQNLYHNPNYVPKPPKEKTHSCHECKRTFAHKGNLIRHLAIHDPDSGHHERALALKLGRQRKVKYIEDQIIKDMDPEAEDQSELVKISGLGNKELKRGEFVTVADGDGQQYVVLEVIQLEDGTEQQVAVVAPDYLEDEEAEEEEEEEEDDEPLEKKFKHQEREPAATRSIKLEKEVDTCFGFDEEEDAEDDDFNDKLVLRLV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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