Pbuc045374.2
Basic Information
- Insect
- Phalera bucephala
- Gene Symbol
- -
- Assembly
- GCA_905147815.1
- Location
- LR990637.1:6580866-6599321[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00092 0.13 14.3 0.8 3 21 148 166 147 167 0.95 2 12 0.081 11 8.1 1.3 1 23 223 246 223 246 0.93 3 12 0.0018 0.26 13.3 2.8 1 23 253 275 253 275 0.98 4 12 0.91 1.3e+02 4.8 0.1 1 23 279 302 279 302 0.91 5 12 9.4e-05 0.013 17.4 1.3 1 23 345 367 345 367 0.98 6 12 0.0051 0.72 11.9 1.3 3 22 379 398 378 402 0.89 7 12 0.00066 0.093 14.7 0.3 1 23 443 465 443 465 0.97 8 12 0.035 4.9 9.3 0.3 2 21 474 493 473 498 0.90 9 12 2.9e-06 0.0004 22.1 0.3 1 23 506 529 506 529 0.96 10 12 0.00017 0.023 16.6 3.1 1 23 535 558 535 558 0.97 11 12 1.5e-05 0.0021 19.9 4.8 3 23 567 588 565 588 0.94 12 12 0.0014 0.2 13.7 3.5 1 23 594 617 594 617 0.98
Sequence Information
- Coding Sequence
- ATGTTTCAACCAGAAAGTAAATCCATATCCCTGTGTTGGGAATGCGAGGCTCAACTTAAAACTTTCATAAAATTCAAGCAAAAAGTCAAACAATCATACACAACTCTTAGCGAGCATATGAAGCAGAATATAAATCGTGAGTACATAAAATCAAAGCCAAAATTAACATCACACAACTTAATTAATATATCTTTATTAAATATCACAGAtaatatagaaaatttatttgaaGTCATCACACCAGAGACTTACATAGACAATTATGATGATAATTTCATAGATTCAAATTCAGAAAACGAAGAATTAATTAAACATGGAACCAAAAAGAagattttgaaagaaaaagttaagaagaataataaaaaaaagatagagATTTATTATAAGGAAGAATTAGGAGAAGATTCAAATTTAAATGAAGAACTTACACCaattaataattgtaaaaaatgtaatataaattttgaaaataacgATGAATTAATAAATCATATGTGTGCAAAACTCGAAAAGAAGAATGATAAAAGAAAGACTTTAAACGGTAGGACTAAGAGAcggagaaaaaataataaaaaggagtTGTACAGAGAAGTAGAGTTAAGTAGAGAAGAATTAGAAGAAGAGAGGAGATTGGCGAAGTTGAAAGAAGATTATGTTAATGCTATGTTTAAATGTGATAGGTGTATTATATGTTTTGCTAATGCTGAAGATTTGAAGGACCACAATACTATGAAACATGATTTGAACTCATCAAAGTTTAAATGCGAGATATGCGAATGTTCGTTTGCAAGTGAAGTATCATTCAATTACCATACTAACAAGCATATTAAGAGGTATCAATGCGGCGTGTGCGCGGAGAGGAGCGGCAGCAAGCGAAGCGTCATGAAGCACTATGAGGACGCGCATTGCCGGGGCACAGGACTGGAGTATGATATACTCGTACTTAACACGCAACAGGACAACCGACAAGTCGTCGATGAGCCCGGAGACGCAGTCAAAGTCGACGAGAGTCTTAAACAGCCACAATCAACCTTCCCATGCGAGTCTTGCGACAAAACCTTTAGATGGAAGACTTCTCTACGGAAGCATCTTGAAACGCATCGCATAGAGACCGGACAGAAGCGAAAACCATACTGTGAACCTTGCagATTATCGTTTACAACAACATCGAACTTACAGAAACATGTCAAAACAAGTTCGAAACATCAAATTCAACTTAAATTAagGAAGCTAAAAGAATCTCAAGTGGAAGAGTCTTCGAGTCCGGAGAAGCAACGGGCGTCTATCGAACAGATCAAATGTTCGGTGAACACCGCAAAGCAGGTGTTCCCGTGCCCACAGTGCGGGAAGCGATTCCAGTGGCGGGGGAACATGCTGCGGCATGTCCAAAGCCACGCCGCCAGGGCGAAAGGCGAACTGGTGTGCGAGCCATGTAACAGAACCTTTTCCTCGATAGCAACGTACAAACAACACATGGAGATAAGCAAGAAACACGTATCCGAGAACGATTTCAAGTACATGTGCAGCGACTGCGGGAAACGCTTCGCGAACAAGGCCCGACTCAAAGACCACATCAACTGGGAACATCTCAAGAACTATGTTCACACTTGTCCCGTGTGTCAGAAGATATTCAAGAGTCACACTTCCCTATACCTCCACCAGCAGGTTGTACATAAGAAGGACAATGCTGAACATCTGTGCCATCACTGCGGGAAAGCTTTTCCGAATCATGCGAAGTTACGTGCGCATATGCGGGCGGCGCACAGTGGCGGCGCCGCCTACAAGTGCGCGGAGTGCGGCGCCAAGTTCAGCTGGCACTCGTGTCTGTCGCGGCACCAGAGGAGAGCGCACAAACAGACACCCGCCTGA
- Protein Sequence
- MFQPESKSISLCWECEAQLKTFIKFKQKVKQSYTTLSEHMKQNINREYIKSKPKLTSHNLINISLLNITDNIENLFEVITPETYIDNYDDNFIDSNSENEELIKHGTKKKILKEKVKKNNKKKIEIYYKEELGEDSNLNEELTPINNCKKCNINFENNDELINHMCAKLEKKNDKRKTLNGRTKRRRKNNKKELYREVELSREELEEERRLAKLKEDYVNAMFKCDRCIICFANAEDLKDHNTMKHDLNSSKFKCEICECSFASEVSFNYHTNKHIKRYQCGVCAERSGSKRSVMKHYEDAHCRGTGLEYDILVLNTQQDNRQVVDEPGDAVKVDESLKQPQSTFPCESCDKTFRWKTSLRKHLETHRIETGQKRKPYCEPCRLSFTTTSNLQKHVKTSSKHQIQLKLRKLKESQVEESSSPEKQRASIEQIKCSVNTAKQVFPCPQCGKRFQWRGNMLRHVQSHAARAKGELVCEPCNRTFSSIATYKQHMEISKKHVSENDFKYMCSDCGKRFANKARLKDHINWEHLKNYVHTCPVCQKIFKSHTSLYLHQQVVHKKDNAEHLCHHCGKAFPNHAKLRAHMRAAHSGGAAYKCAECGAKFSWHSCLSRHQRRAHKQTPA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -