Pbuc045833.1
Basic Information
- Insect
- Phalera bucephala
- Gene Symbol
- -
- Assembly
- GCA_905147815.1
- Location
- LR990638.1:2062537-2064522[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.03 4.3 9.5 1.7 1 23 9 31 9 31 0.98 2 16 9.8 1.4e+03 1.6 0.2 5 23 61 80 59 80 0.92 3 16 0.001 0.15 14.1 4.1 1 23 100 123 100 123 0.95 4 16 6.1 8.6e+02 2.2 1.0 1 10 128 137 128 150 0.78 5 16 0.19 27 6.9 1.7 1 22 155 176 155 176 0.95 6 16 0.0062 0.87 11.6 1.3 3 23 182 203 179 203 0.94 7 16 0.00032 0.045 15.7 0.8 2 21 210 229 209 230 0.94 8 16 0.08 11 8.1 2.1 1 23 364 387 364 387 0.97 9 16 0.74 1e+02 5.1 0.0 3 23 422 443 420 443 0.94 10 16 0.11 16 7.7 0.0 2 23 466 489 465 489 0.93 11 16 3.1e-05 0.0044 18.9 0.2 3 23 496 517 495 517 0.96 12 16 0.00083 0.12 14.4 3.3 2 23 522 544 521 544 0.93 13 16 3.4e-05 0.0047 18.8 0.7 1 23 549 572 549 572 0.94 14 16 9.3e-06 0.0013 20.5 4.2 1 23 576 599 576 599 0.97 15 16 0.0062 0.88 11.6 3.1 2 23 606 627 605 627 0.97 16 16 1.3e-05 0.0019 20.0 2.6 3 23 635 655 633 655 0.96
Sequence Information
- Coding Sequence
- ATGCCTTTCAAATGGCGGAACAGATATCGGTGCTTCTTTTGCAGAGAGAGCTACGATGATTATCTTGAATTGAAAGAACACACGCAATCACACGGTCCATGCTCCACCAAAGACTATTCTCTCATTAACACCAAGAGTCTCTCAGATATAAAGATTGATGTCTCAGAAATCGGTTGCATCATTTGCAACGAGCCGTTCCACAAATTCGAGGAGATCATAGACCATTTAATCACCAACCACAATTTGGACTACGACAAAATTATAGATATACCTTTTCAGGAATTTCGTTTGGTGGATTTTAGGTGTCTAAATTGCGACCAACAATTCTCTTACTACCGTCATTTAGTTAAACATATGAATGATTTTCACCCGCAAAATTCTTTTGTTTGCGAAGAATGCGGTGTTACTGTTAAAAAGGGGGAAATGTCTTGCCACGTGCGAAATTACCACAAGGAAGGCGGTTATCCTTGCGATTTTTGCACGAAAAACTTAGAATCCATATTCTCGTTACATAAGcaccaaaaaaaaactgattgtGGACTTTGCTTTAACTGTGGAATCAAATTCACCTCGCCGGGTCTCCTACATCTGCACATACTAGCCAAACACCCCTCAGACGGTAGCCTAAAATGTTCTTATTGTTCTAAACAGTTCAATACAAATTTCGGTCTAAAACAGCACATTCTCAACAAATGTAAAATCAAAACGTCTATCCAAAAATACTCGAACAGTAATTTGCCAGATAGCAAGAATGGCAACCGGAAAAATGTGATTGTACTTGATCCTCTGCCAATCACTTGGCAAAAAAAATGGTGCAACAATGACAACCAGGAAAATGTAGTGAATTTTAATATTCAGGAGAACATAATCGTCGACGAAGGAGATCCGAAAGATGATATTTCGTGTAACAATAACAGTGATCCCAGAAGTGTGAAAGTACGATGTGCACGTCTGCCTTTATCAGTGCCCAAAAGGAAGCCCGTAATGCTTAGCCACCGGCAAAGGAGGCGAATAACAATTCAGCTAAGACAAAATATACTTACCGTTTTGAACATGTCAACGATAGTCCCTTTTAAATTCTTTTCAATTTTCACCTGCTTCTATTGCACTAAAAAGTCTTCAGACTTTGAGGAGATCAGAGAGCATACTAATTCACAGCATCCGACTAGTATAACGAAACCGGCATGCAATTTAAACTCGAAATGTATTAGAAGTTATAAAGGAAGCCAAAATGCAATTAAAGTAGACGTTTCTGAATTAGCTTGTAAAGTTTGCCAGATGCCGATGGACGATTTAGATAGTTTGATCGACCATATCATTTCGGAACACAATGCGAACTATGACAAATCAATTAAACGTCCTTTCGCGCCTTTTATGATGATTCAAGACAACATACCCTGTCCTGTATGCCCTGATCGCACATTCCGGTACTTCATCCTCCTTCTACGTCACCTGAACGCCGAGCACAGCAATAATCGTAGGATATGCGATTTGTGCGGACGCAGTTTCCAACAGTCTTCAAATTTCCTAATGCATATGGCTATGGCACACGGTAGTGCGTGCGAATGTGATATATGCGGTACTACATTCAAAAATCAACCTTGTTTAGACCGGCATAAGGCGAAAGAGCATGACTTTAAAGGCTACAAGTGTCCGAAATGCCCAGAGATGTTCAAGTCTCAGTATGATAAGCGTAAACATTTGATAGAGGCCCATGATATTGGGCATAAATGTAGCTATTGTGGAAAGATGTTTACAAGGAACTCTTTCATGAATGATCACGTTCGTCGGATGCATTTAAAGGAGAAGAGCAAACAGTGCTCTATTTGCGGCAGCAGGTTTTTTTCTGGTCATTATTTGAAATTGCATATGAAGAATCATAACGGTGAGAGGAATTTTGGTTGCGATGCTTGCGGCAAAACTTTCTTTACTAAGTACCATTTAAAACGTCATTTGAATATACATAAGGATGATAGGGAGGTTTAA
- Protein Sequence
- MPFKWRNRYRCFFCRESYDDYLELKEHTQSHGPCSTKDYSLINTKSLSDIKIDVSEIGCIICNEPFHKFEEIIDHLITNHNLDYDKIIDIPFQEFRLVDFRCLNCDQQFSYYRHLVKHMNDFHPQNSFVCEECGVTVKKGEMSCHVRNYHKEGGYPCDFCTKNLESIFSLHKHQKKTDCGLCFNCGIKFTSPGLLHLHILAKHPSDGSLKCSYCSKQFNTNFGLKQHILNKCKIKTSIQKYSNSNLPDSKNGNRKNVIVLDPLPITWQKKWCNNDNQENVVNFNIQENIIVDEGDPKDDISCNNNSDPRSVKVRCARLPLSVPKRKPVMLSHRQRRRITIQLRQNILTVLNMSTIVPFKFFSIFTCFYCTKKSSDFEEIREHTNSQHPTSITKPACNLNSKCIRSYKGSQNAIKVDVSELACKVCQMPMDDLDSLIDHIISEHNANYDKSIKRPFAPFMMIQDNIPCPVCPDRTFRYFILLLRHLNAEHSNNRRICDLCGRSFQQSSNFLMHMAMAHGSACECDICGTTFKNQPCLDRHKAKEHDFKGYKCPKCPEMFKSQYDKRKHLIEAHDIGHKCSYCGKMFTRNSFMNDHVRRMHLKEKSKQCSICGSRFFSGHYLKLHMKNHNGERNFGCDACGKTFFTKYHLKRHLNIHKDDREV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -