Pbuc025035.1
Basic Information
- Insect
- Phalera bucephala
- Gene Symbol
- -
- Assembly
- GCA_905147815.1
- Location
- LR990620.1:815655-817061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.6e-06 0.00065 21.5 1.8 2 23 157 178 156 178 0.97 2 10 1.4e-06 0.0002 23.1 1.4 1 23 184 207 184 207 0.97 3 10 6.4e-06 0.0009 21.0 2.3 1 23 215 237 215 237 0.98 4 10 4.2e-06 0.00058 21.6 0.3 1 23 243 265 243 265 0.98 5 10 3.8e-05 0.0053 18.6 4.2 1 23 271 293 271 293 0.98 6 10 6.8e-07 9.6e-05 24.1 0.8 1 23 299 321 299 321 0.98 7 10 1.4e-06 0.0002 23.1 0.4 1 23 327 350 327 350 0.96 8 10 2.6 3.6e+02 3.4 0.5 5 20 356 371 354 374 0.76 9 10 0.046 6.4 8.9 0.7 2 23 381 403 380 403 0.94 10 10 0.00066 0.093 14.7 0.6 1 23 440 463 440 463 0.91
Sequence Information
- Coding Sequence
- ATGGACTGGAAGATTTGTAGATTGTGTTGTGAAAAAGATGCAACTTCAAACATCTTCGGGGACACAGGTGATATTCCTATATgcacaaaaataatgtattgcTGCTCCAACGTGTATATTAAACAAGGAGACGGTCTGCCGGCCCATGTGTGCAATAACTGCGAAAGGGAACTTACCGCATGCTACCAATTCGTACTAAAATGCGAAGAGTCtgataaaaaattaagaaaatctcTCTCCACTACCCTAGTCATATCACAAATAGTCACAGAATTTAATGACTTAAACCCAAAAGCTGAAGTTAAGACTGAAATTGACACTGTTGATGATGATCGATTTGAAGAATTACAAAGCATTGATATAACATTAGATTTAAAACAAGATGAATTAGATATTAAGTTTGAAAATGAACAGTATTTGAAAAGGAAGACTTACAAAAAGAGGACTAAGTTTAAAGGAATTGAGTGTAAATGTTCTGTGTGTGGTAGAGAGTGCGCCAGCCCATCAAGCTTAATAATACACATGAGATCGCATACAAATGAGAAGCCTTATCCCTGTCAAACTtgtgataaaaaatacaaagataGCGGTACATTAAAACGTCACATGGAGAGAAATCATTACGATAAGCGGCAACGTAATTTCATCTGTGAGAACTGTGGAAAAGGTTTTTTTTCCAAAAGCTGTGTACAGATTCACATGCGCACCCATACAGGAGAAACTCCATACTCTTGTCCAGAATGTCCTGCTAGATTTACACAAATCAGTGCTCTTCTCAGACACAAGAGACGTCACACAGGTGAAAAAGAATACAAGTGTGTTACTTGCACTAAAAGATTTTGCACCAAAGAAGAACTGAAATCCCACCTAAGCGTACATAGCACTGACAAGAACTACTCGTGCCCTATttgtaatgttgcttttaaataTCAGAACAACTTAAGAAAACATGTAAGACAGCACTCGGAACCAAATAGGTTTGTCTGCAATTATTGTGGACGTACTTTCAATGCCAAAGGAAACTTgaaaatacatatagataggCAACATTCTGAAAAGTCTGGTCACTGTAATATATGTTCTAAGAATGTGTCAAATATTGAAGTTCATATGTGGAGGCATACAGGAGAAAGGCCATTGAAATGTGAGCTGTGTACAAGTAGCTTCTATGAGTTGAAAGCACTGGGACGTCACATGAATTTCAGGCATAAAGAAacagataaatataaatgtaaagttGAAGGCTGTATGATGACCTTCCCTTCGAGGCCAATGCTAGATTTTCACACAGCCAAACTTCATAGCACCAAAATCCCATTCCCCTGTGACAGATGTTCCAGAGGGTTTTACAGAAAGAACGATCTCGCAAGACATAAAATTGGTACTCATAAAGAAAGACTTCCTTAG
- Protein Sequence
- MDWKICRLCCEKDATSNIFGDTGDIPICTKIMYCCSNVYIKQGDGLPAHVCNNCERELTACYQFVLKCEESDKKLRKSLSTTLVISQIVTEFNDLNPKAEVKTEIDTVDDDRFEELQSIDITLDLKQDELDIKFENEQYLKRKTYKKRTKFKGIECKCSVCGRECASPSSLIIHMRSHTNEKPYPCQTCDKKYKDSGTLKRHMERNHYDKRQRNFICENCGKGFFSKSCVQIHMRTHTGETPYSCPECPARFTQISALLRHKRRHTGEKEYKCVTCTKRFCTKEELKSHLSVHSTDKNYSCPICNVAFKYQNNLRKHVRQHSEPNRFVCNYCGRTFNAKGNLKIHIDRQHSEKSGHCNICSKNVSNIEVHMWRHTGERPLKCELCTSSFYELKALGRHMNFRHKETDKYKCKVEGCMMTFPSRPMLDFHTAKLHSTKIPFPCDRCSRGFYRKNDLARHKIGTHKERLP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -