Pbuc046414.1
Basic Information
- Insect
- Phalera bucephala
- Gene Symbol
- Sall1
- Assembly
- GCA_905147815.1
- Location
- LR990638.1:10957073-10990492[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.14 20 7.4 0.0 3 23 105 125 103 125 0.96 2 15 0.0024 0.33 13.0 3.2 1 23 274 296 274 296 0.99 3 15 3.2e-05 0.0045 18.8 0.4 1 23 302 325 302 325 0.97 4 15 0.0015 0.21 13.6 2.4 1 23 330 353 330 353 0.94 5 15 1.4e-06 0.00019 23.1 0.6 2 23 525 546 524 546 0.97 6 15 9e-05 0.013 17.4 2.2 1 23 552 574 552 574 0.98 7 15 0.82 1.2e+02 5.0 4.2 1 23 640 662 640 662 0.96 8 15 2.8 4e+02 3.3 0.0 2 23 670 691 669 691 0.95 9 15 0.011 1.5 10.9 3.9 1 23 697 719 697 719 0.95 10 15 4.7e-06 0.00066 21.5 0.5 1 23 724 746 724 746 0.98 11 15 0.017 2.4 10.2 5.1 1 23 755 777 755 777 0.98 12 15 0.0012 0.18 13.8 1.9 3 23 825 845 824 845 0.97 13 15 0.0074 1 11.4 3.2 1 23 862 884 862 884 0.96 14 15 1.8e-06 0.00025 22.8 0.7 1 23 890 912 890 912 0.98 15 15 2.1e-05 0.003 19.4 5.3 1 23 918 941 918 941 0.98
Sequence Information
- Coding Sequence
- ATGAACCAAGGACCCATGGACATTGACCCTTTAAGCAATTATGAATACCCATCATACGATAGTTACCCCCTTAATCCTGCCTACTCCTATAATATCAAACCTGAGGAACCCATACCATACAATTACAACAATATATCATATGAATTAGTAGTTACCAACGAAACACGCAACAATGAACCTTCAAATGTTAACGATATAGAGAATAACGATACTAAAGATGTCAAACCGACTGCTAGAACGAGAAAGAATAAGAATGGAAAGAGTAATTACTGTTCAGAGAAGATAACAGATACTAATTTTGCATTTTACGGATGTTCTGTTTGTAATATAAGTTACACGGCATTGTATGACTTAGATCAACATGTAATTATACATAAAGACCGTATGACAAGTTACAGGTTGcgtttaaaaaatcaaatcaaaaagaAAGAGTTAAAAAAAGAGAAGAAGAGAATAAAAAAGttgttgaaaattaaaaaagaaaccgaTTTGGAGATTGACATTAAGCCAGAAGACGGTTTTATTGGCAATGAAAAAGCAAGCGATTATTTGAATAAGGAAGATGTTAGTGATCCTAATTCAAATAGCAATGGGGTTATGCAAAATAATTCACAAAACAACGGAAGCTTTATAGATAATTCACAAATTAACGGAAATTTACAAATACATTCACAAAATAATTCGCAGGTTAACGGAAATTTATCGAACACTGAAAACGCTAGTGAAATTAAAGATAAAGAAAATTCAAATAGCAACGATTGTGATAACGAGAATAAAGAGGATAAAGACGCAACGGAATTGAATAATTTAGAGAAAATATACAAATGTTTTGCTTGCAAAAAGCAGTTTACTTTAAGTTATTATTTGAAACTTCATGTTAGATCTCACACAgaTGAAAAGCCTTACACGTGTAGTGTTTGCGGACAGTCTTTTATAACCGCAAGCAAACTGGGAAGACACAACAAGAGAATACATTTGGCTGAGCGGTACCAGTGTAGGATATGCTTTAAGATATTTTCTagATTCGAGTTATTAACAAATCATTTTGATAAAAATCATCCTGACGATAAATTGGAAGGCGAACCTTATGACTACAACGCAATCCTTCCATATCTCAAAGAGCTGGAAGAACAGCTTAAGATCCAGGATGTGAAAGATGAGAAGCCTAAAAGCGAAGACTTATCATGGACCGATGCAAACTCATCCAATTCCGACGTGGCGGCGGGTGTGCAAAACTCCACGGCACCTGGAGAGGACCAAACAGATGATCAGAAGTCTCTTCTATCAAGCATAGACATCATAGTGGAAGAGATCAAGGTAGATCCAGAAGACGCTGATTTTAAGGTCAAGAAGGAATCTGACGATGAGCACCATCCGGGAGATGATGGAGACTTCGGAGCCCAGGATATAGCCAATGACGATGACAATGACGACGTTAAAGATGAACCAATGAAGTATGAAAGCTACTCAGACGACGACTACTTCCCCTCAAAAACCTGGCTGTCTTCCCCTAAAATGGACTTCTCTCCCCCCTCCCCGACACGCCGGCAGCGACGCAAATCTACAGGTCTCGTGTGTGAGATATGCAACAAGAAGTTCAGCAGTGCGTCCTACATGCGGGTCCATTTACGCACGCATTCGGGGGAGAGGCCTTTCAAATGCTGGACATGTGGGAGAGGGTTTATAACGAGTAGCAAGATGCATAGACACGTGTTGACACATGAGAAACCTGATGGAGCAGGGGAAGGGAAATCCGAGAACGCGGACGTGAAATCAGAAGTGGATGAAAATCCGGACGAGGAAGATGTCACtggaaagaagaagaagaaATCATCCCGAAAGAAGATGAAATCCAAATTCTCTAAGAATAATAAACAAGAAGAGGAGAAGCCCAGAAAGAAATACCAGAAGAGGCCACACGCCTGCGAGTTTTGTAATCAAAAGTTTTTGCACCTAGAAATGCTTCAAGTACATAAAAAGAGCCACGAAGGTGAGAAACTGGTGCTGAAGTGTCGGTACTGCCTCGTCGAGGCGACCGACGAGGCGGCGCTGAAGGACCACGAGGCAACTCACACGGGACCGAAACCATACCTATGTACCATATGCGGGAAGTCTTATAAGAAGAGGGAAACTATGGTATACCATAAGAAACATCACAAAACCGGCGAGTTCGTCTGCGACATATGTTCTAAACGTTTCACCGCGGCGAGCAAGCTACAGAAGCACATGGGTACCCATCGGTCGGACAAATTCGTGCTTCGCTACGAGTGCCCAGTGTGTGCGCATATGTTTAACACGAAGTATCACATACATATGCACCTGTCTACGCATCAGAAGGAAGGCCTAATTATAGAAGAGAACCGTAACGAGATCCTCGCAATGGTGCTACAAAACGCTCGGAAAATCCCCAAACAACCCAACGCGCCCGCCAACCTAACAGACATAATACCCTCCGACGAACGTTCCAGAATATGTAATATATGCGGGGAGATATTCCACCATTTCTATTACTTAGAAGAACACCTCAAAAGCCACGGCTCGAAAATAGCTATAGAAGACACGAACAAACACGAAGAGAAGAAATACATATGCGAAGTCTGCAATAAAGGTTTCAAAttgcattattatttaaaattgcaTAGTTTCACACATTCTAAGGAGAAACCGTTTATATGCCAGCAATGTGGGAAAGGTTTTATAACTAAGGGAAAGTTGAAGAGACATTTAGAAACACATACTGGTTTGAAAAAATATCAGTGTCATATATGTTGTAAGTTCTTCACGAGGCCCAGTTATTTGCGGATTCATATCAGAACTATTCATGGGACGCAGGATTATAATTTCAGGTTTGATAAGGGTTATAACTTGCCTATGCCGATTTTAAGTCAGATTTCTGATAAAAGTAGCGTTTAG
- Protein Sequence
- MNQGPMDIDPLSNYEYPSYDSYPLNPAYSYNIKPEEPIPYNYNNISYELVVTNETRNNEPSNVNDIENNDTKDVKPTARTRKNKNGKSNYCSEKITDTNFAFYGCSVCNISYTALYDLDQHVIIHKDRMTSYRLRLKNQIKKKELKKEKKRIKKLLKIKKETDLEIDIKPEDGFIGNEKASDYLNKEDVSDPNSNSNGVMQNNSQNNGSFIDNSQINGNLQIHSQNNSQVNGNLSNTENASEIKDKENSNSNDCDNENKEDKDATELNNLEKIYKCFACKKQFTLSYYLKLHVRSHTDEKPYTCSVCGQSFITASKLGRHNKRIHLAERYQCRICFKIFSRFELLTNHFDKNHPDDKLEGEPYDYNAILPYLKELEEQLKIQDVKDEKPKSEDLSWTDANSSNSDVAAGVQNSTAPGEDQTDDQKSLLSSIDIIVEEIKVDPEDADFKVKKESDDEHHPGDDGDFGAQDIANDDDNDDVKDEPMKYESYSDDDYFPSKTWLSSPKMDFSPPSPTRRQRRKSTGLVCEICNKKFSSASYMRVHLRTHSGERPFKCWTCGRGFITSSKMHRHVLTHEKPDGAGEGKSENADVKSEVDENPDEEDVTGKKKKKSSRKKMKSKFSKNNKQEEEKPRKKYQKRPHACEFCNQKFLHLEMLQVHKKSHEGEKLVLKCRYCLVEATDEAALKDHEATHTGPKPYLCTICGKSYKKRETMVYHKKHHKTGEFVCDICSKRFTAASKLQKHMGTHRSDKFVLRYECPVCAHMFNTKYHIHMHLSTHQKEGLIIEENRNEILAMVLQNARKIPKQPNAPANLTDIIPSDERSRICNICGEIFHHFYYLEEHLKSHGSKIAIEDTNKHEEKKYICEVCNKGFKLHYYLKLHSFTHSKEKPFICQQCGKGFITKGKLKRHLETHTGLKKYQCHICCKFFTRPSYLRIHIRTIHGTQDYNFRFDKGYNLPMPILSQISDKSSV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -