Pbuc045832.1
Basic Information
- Insect
- Phalera bucephala
- Gene Symbol
- -
- Assembly
- GCA_905147815.1
- Location
- LR990638.1:2058169-2060016[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.1e-05 0.0085 18.0 2.1 1 23 42 64 42 64 0.96 2 15 0.96 1.3e+02 4.8 0.0 3 23 93 114 91 114 0.85 3 15 0.012 1.7 10.7 0.4 1 23 134 157 134 157 0.96 4 15 0.0023 0.33 13.0 1.8 1 23 162 185 162 185 0.95 5 15 0.00032 0.046 15.7 0.5 1 23 190 213 190 213 0.95 6 15 0.00021 0.029 16.3 0.2 2 23 216 238 216 238 0.96 7 15 0.032 4.5 9.4 1.2 2 21 246 265 245 266 0.93 8 15 0.00091 0.13 14.3 2.2 1 23 320 343 320 343 0.95 9 15 0.66 93 5.3 0.0 2 23 416 439 415 439 0.93 10 15 2e-06 0.00028 22.7 0.1 3 23 446 467 445 467 0.94 11 15 0.0032 0.44 12.6 3.9 2 23 472 494 471 494 0.93 12 15 0.0013 0.18 13.8 3.8 1 23 499 522 499 522 0.97 13 15 1.1e-05 0.0016 20.3 5.0 1 23 526 549 526 549 0.97 14 15 0.00025 0.035 16.0 0.3 2 23 556 577 555 577 0.96 15 15 7.6e-06 0.0011 20.8 0.5 1 23 583 605 583 605 0.97
Sequence Information
- Coding Sequence
- ATGCGTTTCTTTTCAGATGAGTACCAAGGCCCATACGAGGGCTGTACCTCGGAGCGTAGGCGGAAAAACTTGAAAATACTGTTCAACAACTCCACAATTATGCCTTTCAAATGGCGAGGCAAATATCTCTGTTTTTATTGCGGGAAAAGTTACTCTGATTACCCTGAATTCAAAAAGCACACAAAATCGCACGGTCTCTGCTCCACAAAAGACTATTCCCTCAAAAGAATCAAAGGCATTAACACGGAAATAAAGATTGATGTATCGGAAATCGCCTGCGATATTTGCAATGAGCCATTCAATCTATTCGAGGAGATCATCGACCATTTGATTGGCAAACATGATTTAGAATACGATAAAAGTATTGATATCCCATTCCAAGAGTATCGATTGGTCGATTTTAAGTGTCTACTTTGTGAGGAACAGTTTTCTTACTTCGGTTACTTGGTGACACATGTTAATAACGCTCACCCCCAAAATTGCTTTATTTGCGACGATTGCGGCgtcacttttaataaaaaaagggatctggcttgtCACTTGCGGAACTATCACAGGCAAGGTGGTTACCCATGCGAGTTGTGCGTGAAGAATTTTAGGACGCTTTTTGCTTTACGGACACACCAGAACGCTACACATTTCAGACGTTGCAAGAACTGTGGACTTAGGTTTGCCTCGCTCACTCTCCTGCAACTCCACATACAAGTCGAACATCCTACAACAGATGACAACATAAAATGTAGCTTCTGCTCGAAGGAGTTCCATTCAAATTTAGGCCTAAAACAGCACATCAGTAAATGCAAAGTCAAAACTTTCACACAAAGAGAGCCGATAGAAGATTTCCCCGATACCGAAGACGGTAACAAGAGAAAGAATCAGAACGTAATACAGATTAGACAAAACATACAGTGCGTTTTGAACATGTCAACAGCGACACCTTTTAAGTTCTTCTCTAAATTTACTTGCTTCTATTGCAGTAAAAAGTTTTCTGACTTCGATGAGGTTAGACAGCATACTAATTTAGAGCATCCGATATGCGAATTGAATTCGAAATGCATGAAAAAGTGTAAAGGGGAAAGAGTTTCAGTTAAAATTGACGTTTCTGACTTAGCTTGTAAGTCTTGCAGGCTTCCAATGCAAGATTTGGACACGTTGATCGACCACATTGTTTCAGAACACAACGCGAACTATGACAAATCAATCAAAGACTGTCTTGAACCTTTCAAGATTATAAAAGACAGCATACCCTGTCCTATATGTCCTGATCGAGTATTCCGCTACTTTGGCATACTTCTACGACACCTGAATTCTGATCACAACGATAACAATAGGATATGTGATATTTGTGGCCGTAGTTTTCGAAAGGCTTCTAACTTAAATGTCCATATCGCGTACATGCACAACGGCTCATGCGAATGTAATATTTGCGGTACAAAATATAACAATCAATGGTGTTTAGCACGACACAAGGCAAAAACGCATGATTTCAAAGACTACAAATGTTCGAAATGCCCAGAGTTATTCAAATCACAGTACCATAAGCAGAAGCATTTGATTAAAGTCCATAATATAGGGCATAAGTGTAGTTATTGCGGAAAGATGTTTACAAGGAATTCGTTTATGAAAGATCATGTACGTAGGACGCATTTGAAGGAGAAAAATGTGCCGTGTTCTGTTTGCAATGAGAAGTTTTTTGACAATTATCTTTTGAGGATGCATATGGTGAAACATGATGGTGAAAGGAAGTTTAGTTGTAATGTCTGTGGAAAAGCTTTTCTTAGAAGGAGTAATCTTAATTCGCATTTGGATATGCATAGGAAGTATGGGCATGCATTAATGCCAACGTAA
- Protein Sequence
- MRFFSDEYQGPYEGCTSERRRKNLKILFNNSTIMPFKWRGKYLCFYCGKSYSDYPEFKKHTKSHGLCSTKDYSLKRIKGINTEIKIDVSEIACDICNEPFNLFEEIIDHLIGKHDLEYDKSIDIPFQEYRLVDFKCLLCEEQFSYFGYLVTHVNNAHPQNCFICDDCGVTFNKKRDLACHLRNYHRQGGYPCELCVKNFRTLFALRTHQNATHFRRCKNCGLRFASLTLLQLHIQVEHPTTDDNIKCSFCSKEFHSNLGLKQHISKCKVKTFTQREPIEDFPDTEDGNKRKNQNVIQIRQNIQCVLNMSTATPFKFFSKFTCFYCSKKFSDFDEVRQHTNLEHPICELNSKCMKKCKGERVSVKIDVSDLACKSCRLPMQDLDTLIDHIVSEHNANYDKSIKDCLEPFKIIKDSIPCPICPDRVFRYFGILLRHLNSDHNDNNRICDICGRSFRKASNLNVHIAYMHNGSCECNICGTKYNNQWCLARHKAKTHDFKDYKCSKCPELFKSQYHKQKHLIKVHNIGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHDGERKFSCNVCGKAFLRRSNLNSHLDMHRKYGHALMPT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -