Pbuc045174.1
Basic Information
- Insect
- Phalera bucephala
- Gene Symbol
- ZFY
- Assembly
- GCA_905147815.1
- Location
- LR990637.1:3743248-3745575[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.1e-06 0.00043 22.0 4.1 1 23 8 31 8 31 0.95 2 20 0.003 0.42 12.7 0.5 2 23 37 59 36 59 0.94 3 20 3.3e-05 0.0046 18.8 0.3 2 23 68 90 68 90 0.97 4 20 1.6e-06 0.00022 23.0 1.9 2 23 99 121 98 121 0.95 5 20 1.7e-05 0.0023 19.7 2.5 2 23 129 151 129 151 0.96 6 20 2.9e-06 0.00041 22.1 1.9 2 23 160 182 159 182 0.96 7 20 8.5e-06 0.0012 20.7 1.1 1 23 188 211 188 211 0.98 8 20 0.069 9.6 8.4 1.6 1 23 219 241 219 242 0.96 9 20 0.0038 0.53 12.3 0.2 1 23 253 276 253 276 0.95 10 20 0.00027 0.038 15.9 2.7 1 23 298 321 298 321 0.98 11 20 1.6 2.2e+02 4.1 0.3 2 21 329 348 328 349 0.92 12 20 0.0043 0.6 12.2 1.5 2 23 358 380 358 380 0.96 13 20 0.0031 0.43 12.6 6.1 1 23 402 425 402 425 0.97 14 20 1.2e-05 0.0017 20.1 0.4 2 23 432 454 431 454 0.96 15 20 4.7e-05 0.0066 18.3 1.7 2 23 461 483 460 483 0.94 16 20 0.053 7.4 8.7 3.8 1 23 489 512 489 512 0.95 17 20 0.2 28 6.9 7.1 2 23 520 542 520 542 0.95 18 20 0.0001 0.014 17.2 2.3 1 23 549 572 549 572 0.97 19 20 0.019 2.7 10.1 1.9 1 23 579 602 579 602 0.91 20 20 0.04 5.6 9.1 2.8 5 23 619 638 616 638 0.90
Sequence Information
- Coding Sequence
- ATGTATCAAAACCAGCTAGATTACGTCTGTGACTATTGCTCAAGGACTTTCACAAGGAAATACAACTTGCAAACACATATCGAAAATTGTCACATCAATTCTTCTTGCTATTGTGATATTTGCCAGCAAAAATTCGGCAGTCCGGCTGGCTTACAACTCCATTTGACTAGAGGCCATAATAGTTATGGACAACCATTGCCAGAATGCGATCTTTGCGGAAGAATCTTTACGAGAAAACAGAATATCATGTCACATATGATTACGGTACATTTACAAGGATTAGGCTCCGAAATTCGTTGTCGTTTATGCGATAAAACTTTCACTACAGAACgtaatttaaaaagacataTGAATCAATTGCACAATCCAGACGTACAGTATCCTACGTGCAATGATTGTCATAAGGTATTCAAAGGGAAACATTCTTTGATAGCTCACATACAATCAGTCCACAATTTCAATGAGAAAGATTTTATCAAATGCCATTTGTGTGATAAAATCTACACCAACAATCGAAACTTGAAAAGGCATATTGAAATGTTACACGGTGAAAAAGGAGAGTTCAAGTGTGCCGTGTGCCCTAAAATTTATACCTCCAATCAAAGTTTGAGGCGTCACGAAAGAACTAGACATAATACTGATAATCAGGATCAATTCAAATGTGAGAGTTGTTCCAAAATCATTGTTGGTAGAGATAATTTTGATAGTCACATGCAGTACCATCATACACCGGAAATCGAGAGCAAAGTTGACGATTACGTTTGCATAACTTGCGGAAAATCTTACGGTGAAGAATCTGATTTACGTTTGCACGTAAAAACTAAGCATTCCTTCGAAACCTTCTATAAATACTGCAAGAAATCTCTTCTTAAACAGCAAGAGAAGAATGTTTATAACTGTGAGCTTTGTCGGCATTCGTTTCCGAGTGTTTATAAGTTAAAAGACCATATGAGAACTAACCACGATACTGAATACTCTCTATCTACTTGCAATGTATGTTTTGACAAGTTTTACAGTAAAGAAACTATGATTGCGCATAAGAAAGTATGTTTACCTCCACCAAACGTGAATTCTTGCAGTCACTGCGACAAATTATTTACCGATATATCCAGTCTAGAATTTCATATCAGAATCTTCCATCCACAAGCTCAAATCGCCGATTCTAACATAACTTCGACTAATGCCGACGAAACTGATGGATCTTTTAAGTGCAATCACTGTGACCGTATCTACTATAGCGATAGATCTTTGAAGCATCATATTAAGTTAAAACATACTACGGACGAAGCAATGGAATGTGAGATTTGTGGGAAAATTTGTAGCAACAAATATTATTTAGCCTCTCATATTAAAATCGTTCATAATGACAACGCATGGTCTAGTTGCGAATACTGTGATAAACAGTTTAAATCTAAAAGGAATATAAGAAGGCATATTGAGTATACCCATTTAGGTATGCAAAGACACAAATGTATAGAATGCGAGACGCTTTTCAAAGAAAAGCGCAGCTTACGAAAGCATGTTAGAACTAAACATCCTAATTCTGCATCGTTTCCACAATGCCATATTTGTCATAAAAGATTCGAGTCCGCAAAATCTTGCAAGATACATTTGAAGTTGTTGCATTCTTTTAACATGAACACCCATCCATGCCACCTTTGTTCCGTATCCTTCAGTTCAAATGAAGCTCTAACAATCCATCTCAAAACCAAACACTTAGCAGAAGATGAGATTTATAAATGTGAGGAATGCAACTTAGTTTTTAAAGGACAAGAAAAATTTGATAATCACAACGAAATTTGTCACGTAAACTTAGTTCCGAATATAAAGCAAAAGATATTGCCTCGTTGTATACTATGCATGAAAGATTTCAGTACGCGAAAAACTCTAAAACGGCATATAAAGAAATTTCACCAAGATTTTGAAGTTGACGATCTAGCCAACTTTGGATCGCGAAGGAGAACTTTTAACGTGGACTGTGAGGAATGTATCAAAAATTTCAACGACGATTTCCATCATAACGTGTATTTAAAGCTAAAGCATTTGAGAAATTCTATAATTTTCAAATGCGAATACTGTTTATCGTCTTATAATTCTTTGGAATACGCTATTCAAAGGTACAAAGTCACGAATGTAGAGTTATCCAAAAGTAAAATGATTCTAAGCGAACTATGTACTACAGAAATGAGTGATGAAGAAGGAACATTCTCTGGATTTGATTCTATTCACGAAATGTTGCCGGAAAGTACTACTAATGACATAAAATTGGAACCAcctgataattatattatagatgGGGACATTAAATTTGAGCCAATGTCACCATAA
- Protein Sequence
- MYQNQLDYVCDYCSRTFTRKYNLQTHIENCHINSSCYCDICQQKFGSPAGLQLHLTRGHNSYGQPLPECDLCGRIFTRKQNIMSHMITVHLQGLGSEIRCRLCDKTFTTERNLKRHMNQLHNPDVQYPTCNDCHKVFKGKHSLIAHIQSVHNFNEKDFIKCHLCDKIYTNNRNLKRHIEMLHGEKGEFKCAVCPKIYTSNQSLRRHERTRHNTDNQDQFKCESCSKIIVGRDNFDSHMQYHHTPEIESKVDDYVCITCGKSYGEESDLRLHVKTKHSFETFYKYCKKSLLKQQEKNVYNCELCRHSFPSVYKLKDHMRTNHDTEYSLSTCNVCFDKFYSKETMIAHKKVCLPPPNVNSCSHCDKLFTDISSLEFHIRIFHPQAQIADSNITSTNADETDGSFKCNHCDRIYYSDRSLKHHIKLKHTTDEAMECEICGKICSNKYYLASHIKIVHNDNAWSSCEYCDKQFKSKRNIRRHIEYTHLGMQRHKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCHLCSVSFSSNEALTIHLKTKHLAEDEIYKCEECNLVFKGQEKFDNHNEICHVNLVPNIKQKILPRCILCMKDFSTRKTLKRHIKKFHQDFEVDDLANFGSRRRTFNVDCEECIKNFNDDFHHNVYLKLKHLRNSIIFKCEYCLSSYNSLEYAIQRYKVTNVELSKSKMILSELCTTEMSDEEGTFSGFDSIHEMLPESTTNDIKLEPPDNYIIDGDIKFEPMSP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01179674;
- 90% Identity
- -
- 80% Identity
- -