Pbuc029599.1
Basic Information
- Insect
- Phalera bucephala
- Gene Symbol
- -
- Assembly
- GCA_905147815.1
- Location
- LR990623.1:1303183-1316307[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-11 3e-08 34.7 0.0 4 39 172 208 169 212 0.90 2 4 5.2e-12 8.6e-09 36.5 0.3 2 39 224 261 223 265 0.92 3 4 3.4e-16 5.5e-13 49.9 0.0 2 45 279 323 278 323 0.96 4 4 3.1e-18 5.1e-15 56.4 0.0 1 42 330 372 330 374 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGGTACGGCGCTTCGCGGGTCAAGTGCGAACCGTTGTCGGACGAGGAAGACAGCAATACACAGATCACGCAAACCTATTTGTCATCTCAGCTACCCTCATTGAAACTACCCCAAGAAAAATTTGTCGTTCAGCGTGCTAACGAAAATGTTCCAGAGGATTTGCTGCAAGACTTACAGACTGGCGGGCTGGAGGAGCTGGTGCTGGCGGGCCCGGCCGCCACACCCGTGTGTGTCAAAGAGGAGCGCGTGGACACACCGCCAACTACCCTCGAAACCCTCCAATCTGCGCCACATGCTAAGGGCACTACACTGCTCGACAGACATATGGGTATCTTAAACACGAGTGAAATGCCCGACTCCACCGATTTCATACAGCTGATGGCTGTGAAAGACGAACCCTTATCTGAAGGAGAACAGCAACAGTTCAGCGGTGAAGACACAAGTGATTCGTCGGGCCAGCAGGCATCGCCGGCTTTGCGCGCCAGCCCCAAGAGCTGGACGCAGCGTGACATGGAACTTGCTTTGGACGCACTTAGGAATCACCAGATGAGCCTCACTAAGGCGTCGGCGACGTTCGGCATCCCGTCGACGACGCTGTGGCAGCGTGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGAGGGCGGCGCCAAGTCCTGGAGCGACGCCGACCTGCGCGCCGCGCTGCACGCGCTGCGGGCCGGCGCCATTTCCGCCAACAAGGCCAGCAAGGCCTACGGTATCCCGAGTAGCACGTTGTACAAGATTGCTCGTCGCGAGGGCATCCGGTTGTCGGCACCGTTCAATGCGGCGCCCACGGCGTGGCGGCGCGCCGACTTGCAGCTGGCGCTGGCGGCCATCCGCTGCGGCGCCGTCTCCGTGCAGCGCGCCGCCACGCAGTACGGGATACCCACCGGGACATTGTATGGAAGGTGCAAACGGGAAGGCATCGAGCTTTCTCGTTCTAACCCCACACCGTGGTCGGAAGACGCCATGGGAGAAGCTCTAGAAGCAGTCAgAGTTGGTCAGATGTCGATAAATCAGGCAGCCATACATTACAACCTTCCTTACTCTTCACTGTACGGCAGGTTCAAGAGATGCAAATACCAGATACAGGGCATCCAACAAAACGTACAGACTCAACAAGATATCCTTAAAAGTAATGAAATCGAAAGTCAAAATCAACCGACCGATGTTCCCCAGTACTACCAACAGCTACCGTCACACACCGTCCACCACCACTCTGAACACGAGCATACGCAAATGTACACGCATACATTACCGGATTACAGGCAAGAAACACCGACGCATGTCATACAAGACCAGTACGGGCAGGCAATGTATTACAACCAAGGGTACGGAATTATGACGAGCTGA
- Protein Sequence
- MPGYGASRVKCEPLSDEEDSNTQITQTYLSSQLPSLKLPQEKFVVQRANENVPEDLLQDLQTGGLEELVLAGPAATPVCVKEERVDTPPTTLETLQSAPHAKGTTLLDRHMGILNTSEMPDSTDFIQLMAVKDEPLSEGEQQQFSGEDTSDSSGQQASPALRASPKSWTQRDMELALDALRNHQMSLTKASATFGIPSTTLWQRAHRLGIDTPKKEGGAKSWSDADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALAAIRCGAVSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQGIQQNVQTQQDILKSNEIESQNQPTDVPQYYQQLPSHTVHHHSEHEHTQMYTHTLPDYRQETPTHVIQDQYGQAMYYNQGYGIMTS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -