Pchl023593.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- RREB1
- Assembly
- GCA_951640565.1
- Location
- OX621210.1:6956218-6960775[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.035 3.2 9.2 1.4 1 23 57 80 57 80 0.95 2 12 0.15 14 7.2 0.1 1 22 114 135 114 135 0.94 3 12 0.021 1.9 9.9 0.1 1 23 261 283 261 283 0.97 4 12 0.0011 0.1 13.9 0.4 1 23 292 314 292 314 0.99 5 12 0.00071 0.064 14.6 2.0 1 23 320 343 320 343 0.97 6 12 0.0029 0.26 12.6 1.6 1 23 691 714 691 714 0.96 7 12 0.00024 0.022 16.0 1.3 2 23 911 932 910 932 0.97 8 12 0.12 11 7.5 6.3 1 23 938 961 938 961 0.97 9 12 0.13 12 7.5 1.0 1 23 994 1018 994 1018 0.93 10 12 0.71 64 5.1 0.2 1 21 1042 1062 1042 1065 0.79 11 12 0.0018 0.16 13.3 0.2 2 23 1105 1126 1104 1126 0.96 12 12 0.027 2.5 9.6 5.3 1 23 1132 1154 1132 1154 0.97
Sequence Information
- Coding Sequence
- ATGGACAGAATGAAATACGAACGCCAAGAGTTAAGGAGCACGAGAACCACCAGCATCGATAGTGATAACCGCTCAGACAGGAGCGAGGAGGAAGACTCCCGGAGAGCGAGAAAGCGAGCGGCCTCAACATCTCCTTCGCACATACCTATGGATAAAAGAACTGCACGATTCGAATGCCCAAAATGCCACCAAAGATTCGACTCCATCAACGCGTTCGACATTCATCGCTTCACAGCGCACGGAGACGACTCCCGCTCCGGCTACGCCGACCTCGTAGATTTCTCCAAAAAGAAATTCCCGGAAATAACAAGAAGTTTCGAGCGAAACCACATCGACAGATTCAGATGCGATCTCTGCACCAGAGACTTCCCGAACGCACAAGTCTTAGACATCCATAGAAAAACATGCTCCCCATCAAGCCAAATATCTACTCCCGATAATGACCGCCGTGAAGATTTCTTCGCTAAATTGGACCTTCGGAATAGGTCGTTCGGCATTCCGGGCACGTTGACTCCCCCGATGGAAAGGTTCACTCCAAAGTTCGACGATGGACATATCAGTAATGGCATAAGGCATATGGACGCCGCCCGAGACTTGGCAGACATTCAATCGATACTCCATGTCACGTCAGCAGGAAGCCTTTTAGAGAGACTCACTGGCACCAGAGTATTAGAAAGTTCGGTTCTGACGCCACCGGATACGATCAGTAAAGATCGCGATCAGGAGGAAACTCAAGATAATTTCGCGGCAGAGTTCAGACGAATGAAGTTGCGAGGTGAATTTCCCTGCCGACTTTGCCCTGCTAAGTTTCCTAATCTCAGAGCTCTTAAAGGTCACAACAGGGTACATCTCAGTGGCACAGGACCCGGTCCTTATCAATGCAACATGTGCCCGCATGCCTCTTTAGACAAGGCAGCTTTAGTGAGACATATGAGGACTCACAATGGAGACCGGCCATATGAATGCGCTGTTTGCAACTACGCGTTTACAACCAAAGCTAACTGTGAACGGCACTTGCGAAACAGACACGCTAAAGTTACAAGAGAAGATGTCAAACGATCCATCATTTACCATCCTTCGGAGGATCCTAACAACGATGAAGTGAATTCGAAGATCGCGCGAGATGAAGTTAAAAGATCGCTCGCTTTCCACACGGAGCTTGACAGGCGGAGTGAAAACACTGGTCGTGACACGCCCCTTACACATTTCACCACAGCAAGTTTCATTACAGACAGGCACCCAGTCGCCGCGCTGACAGCTAAACCCATTATACCTGAAGCCCCCTTAACTCCACGAGAACCGGAACAACCTGTACCCAGAATCAAGGTCAAAGGAATTGGTCAGCTTACACAAATACCCGAATTCAGAATGCCAGAAATTTCGTACAAAACCAATGATGTTCAGACTGATGTTTATGAAGAAGAAGACGCTCCTGTAGATCTAAGCACGAATGACAACAACAACTGCGATGTTCTCGATCTTAGCAAAAAGAAACGTGACTCTGATAGCGACGAGCCAAAAACTTCACCGCGTCGTCTTTCCCTCGAGCCAGAAAGTGCATCGGCTGCTGCAACTGCATTCGAAAAAACAAGACTCCTACTTGCCCAGCAAAGACTCTTCGAAAACTCCATCCCAAATATTGATCCTGCTTTCTACGCCACTCAGCTCTCTCAACTTTACGCCGGCGGCGTAACAGGCTTGCCTGGTCTCCCTTTACCGCCTTCCTTTCCTTACTTTCTTCAACCTCCTTTTTTTCCTCACCCTTCCGATTCCCAACAGATGGCCGAAATAAAGCAGCGTATACAGAAAGAGATAATTCGAGGTCTTAGCATGTCTGGAGGAAGACTCGTCCCAAACGAGCAGGAAATCCAGCCGAAGCTGGAACCCGAACCGGAAGAGGAAGAGAAGCCGGTTCCTCAAGTAATTTCCCCTATCCCATCTCCTCACTCTGAATCTCCACGACCTGTCACCAACAGTGTAATACCTCAGCCGGATTCCGTCAAGATGGTGATAAAAAACGGGGTGTTGATGCCAAAGCAAAAGCAGAGGCGTTACCGAACGGAGAGGCCTTTTTCTTGCTCGCAATGCTCGGCACGGTTCACTCTACGCTCCAATATGGAAAGACACGTGAAGCAACAGCATCCTCAGCACTGGAGTGTGCGACGCCCGGCTCCTAGAGCCCCTCCGCCATACCCTTCTTCAGATGCTCTAGCTGACCGCGTGAAGTTTGCTCTCTTGGCGCGTCACCTCGAAACACCATTGCAACAGTCCGAGCGCTCGCCAATCCGTCGTGACTCAGATGAAGTAGCCGACAACGAGGAAGACGAGGACGACGCATTGGTCATTGATGAAGAACCAGAGCTAGATCAAAAACCTGAAGAGCACCTCGGTGCCAGACGAGCTGCCGCAGAAATTCTCATGGCCACATGTCAACAAGAGCTGCACAAAGACTTTGATCTCAAAATTGCTGGAAACCTCATCAATAAACCCGTACCTTTAACCACCGAGAAAATAGAGACTGGAACTGACCCCATTCCGTTGAACATGCACGAGCCTTTGCCGGTTCCTGTCGTTCCTACGCGCAGTGATGAAGAAGAAGATGAAGAAGGCCTGGTTGCATCCACTAGCGAAGGCAACAACTCTGGCAGCGATGAGAATAAATCGGAATCTGACACCGGGAATCAACTGCCAAAGAAAAAATCAGCGTACAGCCTCGCCCCAAATCGTGTGTCCTGCCCATACTGCCACCGAAAGTTCCCATGGTCTTCATCGCTCCGCCGCCATGTTCTCACCCACACCGGGCAAAAGCCTTTCAAGTGTTCTCATTGCCCACTGCTCTTCACCACCAAGTCCAACTGTGACCGTCACTTATTGAGAAAGCATGGAGGATCTGCGAGATCTATCCAAGCTGAACCTATTCCTGAATCTGTATCCCCACCACAGCAGACTAATGATATCCGAACTGTGCCTGAAAGACCTTTTAAGTGCGCTACTTGCCCCACCAGCACTTTCTCCACTATTGAGACTCTGAAGAAGCATATTTCTTCACGCCATGGCTCTGGAGAATCCCAGCCAAACTCTCCCAATCCAGAAATCCCCGAAGACAACTTCGATGGTTTGGTCTTCAAATGCCATCTCTGCGAAGCTTCGTTTGGCGACCGAGGTGGTTCCCTAAACCACCTGGCTAACGCTCACGCGGCAGAATATGAACAGTTGATCAGCAAGGGAGCCCTGGATGCAGCAAGTGACAGGAGTGAGAGTGCCGATGACGATGACAGGGGAAAATTTCCTGACCACGCTAACAGAAAGGTGGTATGCGCCTTTTGCGTCCGTCGTTTCTGGTCTGCCGAGGACCTGCGCCGCCACATGCGGACCCACTCCGGCGAGAGACCGTTTGCCTGCGACCTCTGCCGGCGTCGTTTCACTCTCAAGCACAGCATGCTACGGCATAGGAAGAAGCATAGGGAGGAAATCACGGATGATGAGGAGGCTTCGCCGTGCACGACTGAAGAGAAGATTGTTAATGGATACCGCTACCAAGACGATGACTCCGGCAATGAAATCCCAAACAacgtcaataataataactctCCACCCGCGGCCCCTTTTGAAAAGAAGTTGAAGTTAGACATGACTTCCCGCAAATATTCTTCTGAAACCGAAATTGATGGTGAAAATGGCAGCGACCTGATAGGGAAACTTCTAGGCATTCCTGACAAAACTATCAACAAGATTCTGAACTCTGCGGACGAAGCAGCCAAAATTCTGGGAGTGAACAAATGA
- Protein Sequence
- MDRMKYERQELRSTRTTSIDSDNRSDRSEEEDSRRARKRAASTSPSHIPMDKRTARFECPKCHQRFDSINAFDIHRFTAHGDDSRSGYADLVDFSKKKFPEITRSFERNHIDRFRCDLCTRDFPNAQVLDIHRKTCSPSSQISTPDNDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDGHISNGIRHMDAARDLADIQSILHVTSAGSLLERLTGTRVLESSVLTPPDTISKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKIARDEVKRSLAFHTELDRRSENTGRDTPLTHFTTASFITDRHPVAALTAKPIIPEAPLTPREPEQPVPRIKVKGIGQLTQIPEFRMPEISYKTNDVQTDVYEEEDAPVDLSTNDNNNCDVLDLSKKKRDSDSDEPKTSPRRLSLEPESASAAATAFEKTRLLLAQQRLFENSIPNIDPAFYATQLSQLYAGGVTGLPGLPLPPSFPYFLQPPFFPHPSDSQQMAEIKQRIQKEIIRGLSMSGGRLVPNEQEIQPKLEPEPEEEEKPVPQVISPIPSPHSESPRPVTNSVIPQPDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDALADRVKFALLARHLETPLQQSERSPIRRDSDEVADNEEDEDDALVIDEEPELDQKPEEHLGARRAAAEILMATCQQELHKDFDLKIAGNLINKPVPLTTEKIETGTDPIPLNMHEPLPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGNQLPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGGSARSIQAEPIPESVSPPQQTNDIRTVPERPFKCATCPTSTFSTIETLKKHISSRHGSGESQPNSPNPEIPEDNFDGLVFKCHLCEASFGDRGGSLNHLANAHAAEYEQLISKGALDAASDRSESADDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEEASPCTTEEKIVNGYRYQDDDSGNEIPNNVNNNNSPPAAPFEKKLKLDMTSRKYSSETEIDGENGSDLIGKLLGIPDKTINKILNSADEAAKILGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827412;
- 90% Identity
- -
- 80% Identity
- -