Basic Information

Insect: Petrophora chlorosata
Gene Symbol: -
Assembly: GCA_951640565.1
Location: OX621217.1:1724656-1735471[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 7.3e-06 0.00066 20.8 3.2 1 23 535 558 535 558 0.97

2 8 1.2 1.1e+02 4.4 0.1 2 23 564 585 563 585 0.93

3 8 7e-05 0.0064 17.7 6.2 1 23 593 615 593 615 0.97

4 8 0.00042 0.038 15.3 0.2 3 23 622 642 621 642 0.99

5 8 2.4e-06 0.00022 22.3 1.7 1 23 651 673 651 673 0.98

6 8 1.5e-05 0.0013 19.9 2.4 1 23 679 702 679 702 0.97

7 8 0.063 5.7 8.4 2.8 1 14 708 721 708 732 0.79

8 8 0.0013 0.11 13.8 2.8 1 23 739 762 739 762 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	7.3e-06	0.00066	20.8	3.2	1	23	535	558	535	558	0.97
2	8	1.2	1.1e+02	4.4	0.1	2	23	564	585	563	585	0.93
3	8	7e-05	0.0064	17.7	6.2	1	23	593	615	593	615	0.97
4	8	0.00042	0.038	15.3	0.2	3	23	622	642	621	642	0.99
5	8	2.4e-06	0.00022	22.3	1.7	1	23	651	673	651	673	0.98
6	8	1.5e-05	0.0013	19.9	2.4	1	23	679	702	679	702	0.97
7	8	0.063	5.7	8.4	2.8	1	14	708	721	708	732	0.79
8	8	0.0013	0.11	13.8	2.8	1	23	739	762	739	762	0.96

Sequence Information

Coding Sequence: ATGTTGAACAGCAGTGGGACTTACGGGCCGAATGAAGCCCCAAACAACATGGTTGCGTCGTTAAACCGGTCGCAATCTAACTCGAGCCACATAAACCACAACCTGCATAGTTTTGGTAAAATTGTGCACCAAGCGGCCTCAACGGGAAGCAATCCATATGAAACTCTCAATTACCCTGGTTTTGGACAGCCTTCCACTAATATGCCCTTACAAATGAATCCGTTTCACGCCTACCAAGAAATGGGACATGCATCGCCTCACATGCCTCAGAGCGCCCAATTTCCACACGAAAATTCAATGCAGAGCTATTATCCAGCGGTGAGTACAATGACACATGCTGAGCATCATAATAACATGATGAATTTCCATCAAAATATTATGAGAACTGCCTCGGAATTGGAAATTACAAATGAGAGAGAACAAGGTATCAAGAACTATCCCTTAAACATACCCCAAGTCAGTTCAAAGATATTCCAAAAAAGCCCTTACATTGACTCCTTACATAATGCTCAAATTCACCATCAAAGCAGTACAATGTCATCTGAAATCGGATCTCAAATACCTACAGGGATGTTTGCAAAAATGTCTAACAATGACTATTTAAGCCCTGAGAATCTCAGCCGGAACAGTGAAATGCCATCTAAAAACATACCTGACCTATTTACAAGAGTCACAAATAGTATTGAATCAAATTACTTTGATAACCCAAAAAATCTTAGTCAAAATAGGATGTCTTATGAAAACGAAGAAGCACCTAAATCCATACAGACACCTATTCTCTCTGACTTTGAAAAACATGATCACCAAACCAAGCCAAATGAAGACATGCCAGCAACAAAGATGATAGATAACTGTATTAGCGAAAGAAAACGTAAAAGCCTCGAAAAAACTGTCCGCCTAATCGAAAGTATATTGATAAAGTCTACTAACAACAATATGAAGGCGGATATCGCTGAATCAAATGTAGACTCTGATCCATTGGCACTATCACCGAAATCTGACGTCACAAAAAGCAACGAAACTGATGAAGTAAATGAAAGTGACAGTGATGACGAAGCGTTGATAAAACAATCGCAAAACACAAAACCAGATGCAAAAAGGCATTCACCGTCAAAGAAAATCCACAGTACGAGAAGATCACATGTTATTGAAAACAAAACTGACGTCCAATTTGAAATACCCTTGAAACTTGAACCAGAAGAGATGGACAACGACTTTTCAAATGTGGACGTCAAAGTTGAACATTCCAGTTGGCCTGACATAGATTATGGTAATCCCTTTCATAGAGATAGTAACGGTACGCCTAGAAGTGGTGTCGGAGATACAAAGATAATCAGTATGGAGACCAGTGTAGAAGAAGCATTGGAAAGTATTGAAAATGGTACAAAATCAGTGGTGTTCTACGAATGCCCACACTGCTTGTTGCTGCTAAACCATCCGAAGAGATTCCTTGTTCACTTCAAATGGCACACATTCGGGCTACTCAATGAACAACGAGCCGAGATCGCTAGGGAACGAGAAGACAAGGCGAAGGCGAAACGACGAGCGAGGATTATACAAAGATTAACCATAGCAGAAGCGACCGGTGTTGAACAAGAGCAGTTCCCTTGCAAGAACTGTGAAAAAGTATTTCAGACAAGAAGCAGCTTGAAAAACCATAGACGCAGATTCCATCCGACAGAACAGACAGAGTGCCGTATATGTCTGTTACCTGTATACGGTCTGAAAGCGCTGAGGGAGCATATGACAACCCATGAGGACAAGGAGGCCGGGGTGCATCAGTGTCCGCATTGTCCCAAGCGGTTCAAATACCGACATTCGCTCGCTAAGCACGCCGATACGCATCTAGAGAAGACCCACGGCTGCCCGGAGTGCAGCAAGATGTTCGGCTCGGCGCAGCTGGTCCGTCTTCATATGAAGACACATGAGCGAGCGGCGCGCGGCACCACCTACCACTGTTCCTACTGCGGGAAAGGGTTCTATGAACCTTATAACTTGaacGTTCATGAGAGAACGCATAGGAACGACAAACCCTTCAAATGCGACATCTGCGAGTCGTGCTTCGTAACAAACTCCAGTCTGAAGAGGCATGTCAAAGTGTCGCACAGTGGCGCCAAACCCCACTCGTGCAAGGTGTGCCAGAAGTGTTTCTCGACGGCTTCCATCCGCGACCGCCACGAGCTGAGGGTACATACCGACCAGAAGCTGTTCCCGCACCAGTGCCAACTGTGTCCCAGACGATACATGAAGCCAAAGGATCTCAGGAACCATATGTACAAGATGCATGCTAAGGAAAGGAAAAAAGATACGACCATCGAGGCTGAACCTCTTTCgtcataa
Protein Sequence: MLNSSGTYGPNEAPNNMVASLNRSQSNSSHINHNLHSFGKIVHQAASTGSNPYETLNYPGFGQPSTNMPLQMNPFHAYQEMGHASPHMPQSAQFPHENSMQSYYPAVSTMTHAEHHNNMMNFHQNIMRTASELEITNEREQGIKNYPLNIPQVSSKIFQKSPYIDSLHNAQIHHQSSTMSSEIGSQIPTGMFAKMSNNDYLSPENLSRNSEMPSKNIPDLFTRVTNSIESNYFDNPKNLSQNRMSYENEEAPKSIQTPILSDFEKHDHQTKPNEDMPATKMIDNCISERKRKSLEKTVRLIESILIKSTNNNMKADIAESNVDSDPLALSPKSDVTKSNETDEVNESDSDDEALIKQSQNTKPDAKRHSPSKKIHSTRRSHVIENKTDVQFEIPLKLEPEEMDNDFSNVDVKVEHSSWPDIDYGNPFHRDSNGTPRSGVGDTKIISMETSVEEALESIENGTKSVVFYECPHCLLLLNHPKRFLVHFKWHTFGLLNEQRAEIAREREDKAKAKRRARIIQRLTIAEATGVEQEQFPCKNCEKVFQTRSSLKNHRRRFHPTEQTECRICLLPVYGLKALREHMTTHEDKEAGVHQCPHCPKRFKYRHSLAKHADTHLEKTHGCPECSKMFGSAQLVRLHMKTHERAARGTTYHCSYCGKGFYEPYNLNVHERTHRNDKPFKCDICESCFVTNSSLKRHVKVSHSGAKPHSCKVCQKCFSTASIRDRHELRVHTDQKLFPHQCQLCPRRYMKPKDLRNHMYKMHAKERKKDTTIEAEPLSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -