Pchl028220.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621218.1:2992781-2998354[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.027 2.4 9.6 0.2 1 23 261 283 261 283 0.94 2 17 0.0087 0.79 11.1 0.0 2 23 308 330 307 330 0.95 3 17 0.0075 0.68 11.3 1.6 2 23 353 375 352 375 0.94 4 17 0.00084 0.076 14.3 1.0 1 23 379 401 379 401 0.97 5 17 0.0052 0.47 11.8 0.4 1 23 406 429 406 429 0.96 6 17 0.0094 0.85 11.0 0.4 1 23 466 489 466 489 0.94 7 17 0.0017 0.16 13.3 3.1 1 23 495 518 495 518 0.95 8 17 5.3e-05 0.0048 18.1 0.6 2 23 526 547 525 547 0.96 9 17 0.083 7.5 8.0 3.0 1 23 553 576 553 576 0.96 10 17 7.4 6.7e+02 1.9 0.3 10 23 583 597 582 597 0.92 11 17 3.2 2.9e+02 3.1 1.9 3 23 668 687 666 687 0.86 12 17 0.68 61 5.2 0.3 1 23 691 713 691 713 0.96 13 17 0.0021 0.19 13.1 2.0 1 23 718 741 718 741 0.92 14 17 0.078 7.1 8.1 3.0 1 23 747 770 747 770 0.96 15 17 0.015 1.4 10.4 0.3 3 23 781 802 780 802 0.95 16 17 0.00012 0.011 17.0 1.4 1 23 807 829 807 829 0.97 17 17 0.048 4.3 8.8 1.1 1 23 835 858 835 858 0.92
Sequence Information
- Coding Sequence
- ATGGCAACTTCAAACTCTTCAAAGGTAGAAATAAAGACTTACTTCGGACAATGTAAATGTTGTCTCAATTATGCGTACTTGAAGAACATGTGGGAACAGCATTGCACCGAGGGAGTACGAGAAATATACGGAAAGATGCTTGTTGactgtttttgtatttctTGGACAATTAAAGACACAATTGAAGATGATAAGATATGTGAAGAATGCATAATAAGGCTGCGTGATGCTGCCAGCTTTAAGAAGCTGGTGATCAAGTCTCAGGAGAAATTTGAGGACAGCAAAGTTAAAGCTGATGCAGCCCCTGAAGGTGGGTGCGTAAACAAAGAGCGTGGGAGTAAGGGTTCATTTGAAGATCAGAAAGATTACCAGGATGTCGAGTTTTTGGAAGAAGAGATACTGGAGGTCGCCTTCCAGGATGACGACAGtcaagCCTCTCAAGACTCTCAACCGGAAACTAAAAAGCGCAAATGGCCCAAACGGGCTAAGaataaaacatataaacagTACACCGAAGACCAGTTGAAGACTGCCGTTGAAGCTGTCAAGTCTAAAGAAATGACCGTGTCAGAAGCTGCCCAAAAATATGAGGTGCCAAGGAAAACTATTGGCTTTAAGGCAAAGATAGATGATAATGATGGCGACAGCGGACTGGAATACCCTGGTGAAGACGAAGAGACAGACAATAAGGAACACATCCTTAATAAGCACAGAGATAACATACGGTCTATCCTCCAAGCAACGAATGCTACACCAATCAAAGGCCACTGGGGCATCGGATACGCTTGCTCCTTTTGCCCTCAGCAATTCGCAGCTCCCAAAGATTTGAAAGAGCACACGTATGGACACGAAAATAAATTCGCAAGCTTCAAAGTCCGATCCCTTCCGTTACACATAGTGAAACTGGATATAACAGACCTGAAATGTGACATATGCGACCAAGAAATCGATTCACTTGAAAATCTGATGGTGCACCTCAAAAATATACATTACATGCCAATGCATATGGATATACCGAACCATATAGTTCCGTTTAACTTCCAAAACGAAACGCTCAAATGTGTGAGATGCCCGAAGCAATTCGGCACGTTCAAACATCTATCGGAGCATATGAACGATGAGCATTGCAGGAACTACGAATGCAATGTATGCCATCGGGGATTCGTCAATGTAAGGGCGTTAAAGACTCACAGCATAAGGCACAAAATCGGCATATTTGCCTGCTCGTTTTGCCCGAAAATCTTCGATACGAGAATAAAAATGACGGAGCACGAGAGAGTGACACACCAAAACAACTGCAAAACAAGAAAATGTTCGTACTGCGATGAGAAATTCTTGGATGTAGTGCGGAGAGCGAAACATGAAACTGAAGTCCACGGCGTTTCAAAGCCTGAGCACAAATGCGCGGCTTGCACTAAAGTGTTCGACAGCAGGCGGGCTTTGCTAACGCACGTAAACGGGGTACACTTATTGTACAAGCCACATGAATGCAATGTCTGCGACAGCTCATTTTACCTAAAGCACGAATTGAAGAAGCACATCCTTTACGTTCATTCGGAAAACCGTCGTCCTCTCAAATGTGATGTGTGCCCTCGCACGTATTCTACTCCCCGGGCGTTAAAAAAGCACTCTTTAAAGCACAGCGATGAGAGAAAACATGAGTGCGAGATATGCAGCCATCGGTTTCAGAAAGTGGAGAATTATTTGGCGCATGTCCGGAATAAACATGGTGCCGACAGCCCTGCCTTCGAGGACCCACAGGAATTACGCACACATACGCACACCACACACACAGACAAAGTGAAACGAGTAGAGTTCACGTTGCGACCTCACTACAACAACGAAATGTTGAGACTCGACGTGCAAAACCTCGCTTGTGTGTGTGGCGTAAAAGGAACATGGCATGAAATGATAGACCATCTCAAATCAAAACACGAAGTCGCTCTTGAAGAATCTAAGACGAGAATTGTTCCTTACACATTATCGACACCTGAAATGTCTTGCGCGCTTTGCGATTATTATTCCAACTTCTCGAATATTCACACACATATGAATACGCACTACAACAATTACATATGCGGTGAATGCGGAGACACCTACATAACCATAGCGAGACTGAATTGTCACATGAAAATCCACAAAATCGGAGCGTTTCCATGCAAGCTGTGCAATAAAGTCTTTTCTAGAGAGATGTACAGGAAAAGACACGTAGATTACTTCCACGATAAGAAGTTAGTTTTCAAATGCCCGCATTGCGAAGACCGGTTCTCCACTGAAACCTTAAGGTACAATCATATGCAAGAAAAACATAAAGAGAAGTTGGAATCTAAGGCGAAGATTTGTCGGATCTGTGATAAAAGTTTTAGTTGGGGCTCGCCTTTTGCCCAGCATATGAGGAGATACCATGGTCTATCATCACACACTTGTGACGAATGCGGCCGAAGCTTCGATGGACAAAAACTCCTCAACGAGCATAAACTGAGGCACACGGGTATAAGGAAGTTCAATTGTGACATCTGCCACAAATCTTACTTCTCTGAGGCAGCGGTCGCTATGCATAAGAAGTGGAAGCATAACGAACGGGCTGAGCGAAGCGAGCAGAGTGAAGAATTAGTGCCGGTTGAAGTGGAAGCATAG
- Protein Sequence
- MATSNSSKVEIKTYFGQCKCCLNYAYLKNMWEQHCTEGVREIYGKMLVDCFCISWTIKDTIEDDKICEECIIRLRDAASFKKLVIKSQEKFEDSKVKADAAPEGGCVNKERGSKGSFEDQKDYQDVEFLEEEILEVAFQDDDSQASQDSQPETKKRKWPKRAKNKTYKQYTEDQLKTAVEAVKSKEMTVSEAAQKYEVPRKTIGFKAKIDDNDGDSGLEYPGEDEETDNKEHILNKHRDNIRSILQATNATPIKGHWGIGYACSFCPQQFAAPKDLKEHTYGHENKFASFKVRSLPLHIVKLDITDLKCDICDQEIDSLENLMVHLKNIHYMPMHMDIPNHIVPFNFQNETLKCVRCPKQFGTFKHLSEHMNDEHCRNYECNVCHRGFVNVRALKTHSIRHKIGIFACSFCPKIFDTRIKMTEHERVTHQNNCKTRKCSYCDEKFLDVVRRAKHETEVHGVSKPEHKCAACTKVFDSRRALLTHVNGVHLLYKPHECNVCDSSFYLKHELKKHILYVHSENRRPLKCDVCPRTYSTPRALKKHSLKHSDERKHECEICSHRFQKVENYLAHVRNKHGADSPAFEDPQELRTHTHTTHTDKVKRVEFTLRPHYNNEMLRLDVQNLACVCGVKGTWHEMIDHLKSKHEVALEESKTRIVPYTLSTPEMSCALCDYYSNFSNIHTHMNTHYNNYICGECGDTYITIARLNCHMKIHKIGAFPCKLCNKVFSREMYRKRHVDYFHDKKLVFKCPHCEDRFSTETLRYNHMQEKHKEKLESKAKICRICDKSFSWGSPFAQHMRRYHGLSSHTCDECGRSFDGQKLLNEHKLRHTGIRKFNCDICHKSYFSEAAVAMHKKWKHNERAERSEQSEELVPVEVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01172275;
- 90% Identity
- iTF_01172275;
- 80% Identity
- iTF_01172275;