Pchl026058.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621214.1:10481899-10484912[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.017 1.5 10.2 1.8 1 23 249 272 249 272 0.97 2 18 3.4 3.1e+02 3.0 3.4 1 23 277 300 277 300 0.90 3 18 1.4 1.2e+02 4.2 4.2 2 23 304 325 303 325 0.95 4 18 0.0079 0.72 11.3 0.3 3 23 332 353 332 353 0.97 5 18 0.00015 0.014 16.7 1.0 2 23 417 439 416 439 0.96 6 18 0.00025 0.022 16.0 1.5 1 23 445 468 445 468 0.93 7 18 0.00016 0.015 16.6 1.4 2 20 472 490 471 492 0.94 8 18 0.00063 0.057 14.7 1.6 1 23 500 523 500 523 0.96 9 18 8.7e-05 0.0079 17.4 0.6 1 23 528 551 528 551 0.95 10 18 0.027 2.4 9.6 0.1 2 23 564 585 563 585 0.93 11 18 0.0053 0.48 11.8 1.7 1 23 591 613 591 613 0.97 12 18 2.9 2.6e+02 3.2 0.2 2 17 619 634 618 635 0.81 13 18 3.1e-06 0.00028 22.0 1.0 1 23 650 672 650 672 0.98 14 18 0.17 15 7.1 2.2 2 23 677 698 676 698 0.96 15 18 0.0019 0.17 13.2 0.9 1 23 709 732 709 732 0.97 16 18 9.8e-05 0.0089 17.3 1.4 1 23 738 760 738 760 0.99 17 18 0.00049 0.045 15.1 7.5 2 23 767 788 766 788 0.96 18 18 0.015 1.3 10.4 2.2 1 23 794 817 794 817 0.96
Sequence Information
- Coding Sequence
- ATGTCTAAACCCGAAGAACCGCAAAAGATCAAGCATAACCTCGAATGGCTCAAGAGTAAGTTGGGCACTCTCGCAACGGCGCCAAGGTATTGCGGGCTGTGTTTGGCAACATCCGGGAATTTCTATCCATTGAAGACTGAGTTTGCAATTAATGAGTGCTACTCTACCAGACCTCTTAGGGAGGTGGTCGGTGCTGTTTTAAACTATgatATTGATGATTATGTGTCAAGTGAGATAATATGTGAGGAATGTACAGAAAAGACTATACAGTCGTATGTATTCATTGAAAACACTAAAAAAGTATTCAATATTCTTAACTATTGTGTGAACGACTTACTCTCCAAAGCCACAGATCTCAATAATGAATTGGACGAAAACTGCGACTATGAAAATGCAAATGTAGTGATTGTAGTTGAATGTGACGATGAAACACACAAAAACGTTGATGACATAACCACGGGGAATAATACAATTCTTACGAACACACCTATTAAGTGCACAAAACCAACTGCAGAAACAAAACCACAGGAGAAACCTTTGGCTAAATTAAAATTGAGTAAAGAAAACACACGACCTGTAATAATTCCTACAGTCAGAGTAATAAAACATCCAAGAattaaagaagtaataaagaaTCAAGAAAAACCAGCAGTACAAAACACACCGACGGTGTCTCTTGAAGGAGGCAAAATAGTTATTGCTCCGATGAATACAAACACACAATCAGCCCCTAAATTTAATACTTACAGATGTTCCTCTTGTACTAGTATCTTTACTACGTATAGGTCATTGAAAGAACATGAAAAATCAGTGCATAATACAACAGTATTCCAATGCAGATGTTGtagtaaaaaatacaattctcAGCAGTACCTGGACGTACATTACACTGCAGCTCACTCTAAATCAAGGTGCAGGCATTGCCATGAATTGTTCGATTATAATGAATTAAATAGTCACTTACGAGCGAAGCATGAGAAACAAGTGAATGGTTGCAAATACTGCGATCTTGTATACTACACAGTGGAGCAATTAGAGACACATTTTAAATCAGCTCATCTGATTAATGATCTACCatctaatacaaataaaacgcaATGTGTTATGTGCCTTAGAAACTTTAGAGATTGTGAAATAAAACAGCATAAGTGTAAATTTTCATGTCTGGAATGCCCCATAGTACCATGTGTTCACTACAGCTATTTAATGTCATTTAGAGAGCAAGTACTGAGTCACACAAACAAAATTAGATGTCTAGATTGTGATTATACTACAAAGAGGAAAGAGCACTTAATAGCACATGTTAATAGAGAACATTTGGACTACCATCCGTTCACTTGCAGTGACTGTGGAACACAATTTTACACTAAATTAAGCTTAAAGACGCACATAGTCCAGTTTCATCAAGAGGTGAAATGTCATTACTGCGATCATGAGTTTAAAAGTTCTAAATTATTGCAGAATCATATAGAGCTTTGTAAGACTGTCACTAGAATGTTCAGTTGTGAACAGTGTGTGGCCTCTTTTGATACAGAGTCCGAGTTAAATAAGCACACCAGACATAGTCACAGCGATATAGTCTTCCCATGTACATTATGCAAGAAAGAATTCACAAATGAATCTGCACTCGAAGAACATCACGCTAGAGTTCACAATGGAATACAGTACAAGAAACGAAGAAAATTCATTGAATGTACGCTATGTGATATCACATTCAAAAATATCAAGGAGATGCTTCAACATGAAGAGCTACATGATCCAAATGAAGCATATCCTTGCAAAGTCTGCTCAAAGAGCTTTCCAAGTCTAAAGAAAGTGTACATGCATAAACAGAAACACTATTCTCAAAGAACAAAGTGTCCAGGCTGTAACAAACTCTTGGCTTCGTCATATTTCCTTCAGCATAAAGCAGTTTGTCCATATTTGAAACAACCACAGAATTTGCCTCATACATGTGATATATGTGGTAAAGCTTTCCGCTTAGAATCAACTCTTCGTGCCCATCAGCTACGCCATGCATCGGCTATGCAGTGTGAACACTGCAACAAGCTGGTAAAACCATCTACTATGAAGAAACATATAGAAACCAGACACGCAAACGATCAAGACagagaaaaatatgtttttaaatgtgATTATTGTAATTATGTGGCAAAAAAAAAGGTTGATTTTGAGAATCAcgtaaacaaaatacatttgaaAATCAAACCATATGTATGTGaggtttgcaataaagcattttgcgGAAAATCAAGGTTAGATGAGCATTTGAAGACTCACTCTGAAAACAATGTTTGCTTTTGTACATATTGTGGTAAAAAATTTGCAAACAAAGTATGTCTCAAAATGCATACACGACGGCACACAGGCGAGAAACCTTATGAATGTAATATTTGTTTCGAACGATTCCGGTCTTCAAGTATAATGAAGACACATAGACTTAAGAAGCATCAGGATAAGACTATAAAGTGTCCATTGTGTGAATCGATGTATCATTTGGCTGCGGAAATGAGGTTCCATGTTAAAAAAGTCCACTGGAAAAATCCAGAGCCTTTCGATTACAAACAGATTGTGGCAGAAGAGTTCCATCACTTATTTGAAGATCGTAGACTGCAGAAGTTGGGTGAAGAAGAATTTTTGCCAGGAGCAGAAGAATAA
- Protein Sequence
- MSKPEEPQKIKHNLEWLKSKLGTLATAPRYCGLCLATSGNFYPLKTEFAINECYSTRPLREVVGAVLNYDIDDYVSSEIICEECTEKTIQSYVFIENTKKVFNILNYCVNDLLSKATDLNNELDENCDYENANVVIVVECDDETHKNVDDITTGNNTILTNTPIKCTKPTAETKPQEKPLAKLKLSKENTRPVIIPTVRVIKHPRIKEVIKNQEKPAVQNTPTVSLEGGKIVIAPMNTNTQSAPKFNTYRCSSCTSIFTTYRSLKEHEKSVHNTTVFQCRCCSKKYNSQQYLDVHYTAAHSKSRCRHCHELFDYNELNSHLRAKHEKQVNGCKYCDLVYYTVEQLETHFKSAHLINDLPSNTNKTQCVMCLRNFRDCEIKQHKCKFSCLECPIVPCVHYSYLMSFREQVLSHTNKIRCLDCDYTTKRKEHLIAHVNREHLDYHPFTCSDCGTQFYTKLSLKTHIVQFHQEVKCHYCDHEFKSSKLLQNHIELCKTVTRMFSCEQCVASFDTESELNKHTRHSHSDIVFPCTLCKKEFTNESALEEHHARVHNGIQYKKRRKFIECTLCDITFKNIKEMLQHEELHDPNEAYPCKVCSKSFPSLKKVYMHKQKHYSQRTKCPGCNKLLASSYFLQHKAVCPYLKQPQNLPHTCDICGKAFRLESTLRAHQLRHASAMQCEHCNKLVKPSTMKKHIETRHANDQDREKYVFKCDYCNYVAKKKVDFENHVNKIHLKIKPYVCEVCNKAFCGKSRLDEHLKTHSENNVCFCTYCGKKFANKVCLKMHTRRHTGEKPYECNICFERFRSSSIMKTHRLKKHQDKTIKCPLCESMYHLAAEMRFHVKKVHWKNPEPFDYKQIVAEEFHHLFEDRRLQKLGEEEFLPGAEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -