Pchl028265.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621218.1:3277315-3280012[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.27 24 6.4 0.0 3 23 43 64 41 64 0.91 2 17 0.33 30 6.1 1.0 3 23 88 109 86 109 0.94 3 17 1.2e-05 0.0011 20.1 1.0 1 23 114 137 114 137 0.97 4 17 0.029 2.6 9.5 5.8 1 23 140 163 140 163 0.96 5 17 0.073 6.6 8.2 1.2 1 23 169 192 169 192 0.95 6 17 0.001 0.092 14.1 1.4 2 23 200 222 199 222 0.95 7 17 2 1.8e+02 3.7 0.3 1 23 227 249 227 249 0.92 8 17 9e-07 8.1e-05 23.7 2.7 1 23 255 277 255 277 0.98 9 17 0.24 21 6.6 0.5 1 20 360 379 360 382 0.93 10 17 9 8.1e+02 1.6 0.1 3 23 409 430 408 430 0.90 11 17 1.8 1.6e+02 3.8 0.5 3 23 454 475 452 475 0.93 12 17 0.00041 0.037 15.3 2.2 3 23 483 504 482 504 0.98 13 17 7.9e-06 0.00072 20.7 1.1 3 23 511 532 510 532 0.97 14 17 0.046 4.1 8.9 3.6 1 23 538 561 538 561 0.97 15 17 0.00064 0.057 14.7 2.2 2 23 568 590 567 590 0.95 16 17 0.015 1.4 10.4 1.5 1 23 596 618 596 618 0.95 17 17 0.012 1 10.7 0.8 1 23 624 647 624 647 0.90
Sequence Information
- Coding Sequence
- ATGAAAGACTGTGACATTCTAAAAGAACATACTCATAAACACAACTCGGTAGACTTAGAAGATTTCGTCAGCAAACGTATAATAACCAAAGATGTGCCTATCAAAGTTGATATCACTGAGATAGCCTGTAAAGCCTGCACAATTCCTTTTGCTAAATTAGAGGATCTAATATCCCATATAGTTCAGAATCATAACGAAGAATACGATGAAACTGTTGGAGAGTGTTTCTTCCCATTTGTCTTAAATAAAAACGTTATGAATTGCGTGCTATGCGGACATAGCTACGACAACTTTACAAGCATGATAGGTCATATGTATAAGCAACATATAAGCCACTTTTACATGTGTCAGATGTGTGGATTAAGTTTCAAAGACCAGATTCGTCTAAAAAGACATATCACGACAAGCCACGAAGGTCATAGATGTACGCTTTGCAAGAAAACCTTCGACGCGTATCGGAAATTGGAAAAGCATAAGCAGAGATTCCACGGTCAAGTCAAGCTGCACGAGTGTAGTCTATGCAGTGAAAAGTTCCTTAACAATTACCAGGTTAAAGTCCATATGGGGAAAGTCCACAACGTGGAAAAATATCGGATTAAATGTGAGCATTGTCCCAAAGTTTGCACAACGAAAGGGGCTATGCTCCTACACGTTCAAAGTATACATTCGGAGGTCAGATATCAATGCGACTTGTGCGAGTACACGGCTGGCATAAAATGGCTAATAACTCTTCACAAACGTAAGCACTTGGGGCTGAAGGAATACTCTTGCAGTATATGTGAAAGGCACTTCGGGAGATCCAGTAATCTTCGAACGCATATGAAGGTGCATACGGGAGAACATAGAGGTGGCCAGAAAGAGATCCTACCAACTAAGTCGAAATCCAGCACGCCTGTAAGCATTCGGCGAAAGCGTGAAGTCATCACCGACACAGATTTGGCTCCTCCAGTCAGCATCTTACAGAAGAAAGGACCAAAAAGGCTATCGGCTAAAGAAAAACGGAACATTATGATACAAAACGTTACACAAGTTCTAGTAAAGACGACGGTGATGCCTTTCAGATGGTTGAAAAGTTCGTATCGATGCTTCTACTGCTACGACATCTTTCAAGAAGCGTCTGACCTCAAAGCTCATCAACCGTCTCATACTGGTGACGAAATCAAAGTGAAAGCAATGAAGAACTACTGGGAACCAGTTGTTTACCTAGATATATCGAACATGGCGTGCAAACTCTGTCCGGATAAAGTTACCGATCTATACGACATGATAGACCATTTGATAGAGAAACATGATGTTGTCTACAACAAAGATATAGGAGTGTGTATGGTTGCGTTCAAGCTAGATAACTTCAACGTCAGCTGCTTGGCTTGCGGAGCAAACTTCTTTACTTTCGGCCCATTACTCCATCACACGAATAAAGATCATAAGGGCACCTCAGTAATACTTTGCGATGTATGTGGCCAGCACTTTAAACACGCAAACTTACTAAGGCTCCATGTTAAAACAGTGCACGAAAACGCTGGCCTACTTTGCCCTGATTGCGGTGAAAAATTCGAAACAAGATCGAAGCTTAAAACCCATCAGAAGAATCAGCACGATCTAGAGAAAAAGTACAAATGTCTGGTCTGTTCTCAAACTTTCCAGAGTCACTACAAGAGATCACGTCATATGGCTTCAGAGCACAAAAACCGGCAAGAGATCAAATGTCTTCACTGTCCGAAGACCTTTGTGTTCCGAAGCATGATGATGACTCACCTGCGGGACACGCATCTAAAAGTCCGGAACCATATTTGCAGCGTATGCGGATGGAGAGCCTTTACTAGTAACAGATTGCAGAACCATATGTACAAGCATAGCGGTGAAAAGAACTTCAAATGTGATGCGTGTGATAAAGCCTTCACTACGAAAAAGATTATGAAGGCTCACTTTGCGAGGATGCATAAGACGCCCCAACAACCAATAATGCCTTATAACCATCCATATGGCGGACAATGA
- Protein Sequence
- MKDCDILKEHTHKHNSVDLEDFVSKRIITKDVPIKVDITEIACKACTIPFAKLEDLISHIVQNHNEEYDETVGECFFPFVLNKNVMNCVLCGHSYDNFTSMIGHMYKQHISHFYMCQMCGLSFKDQIRLKRHITTSHEGHRCTLCKKTFDAYRKLEKHKQRFHGQVKLHECSLCSEKFLNNYQVKVHMGKVHNVEKYRIKCEHCPKVCTTKGAMLLHVQSIHSEVRYQCDLCEYTAGIKWLITLHKRKHLGLKEYSCSICERHFGRSSNLRTHMKVHTGEHRGGQKEILPTKSKSSTPVSIRRKREVITDTDLAPPVSILQKKGPKRLSAKEKRNIMIQNVTQVLVKTTVMPFRWLKSSYRCFYCYDIFQEASDLKAHQPSHTGDEIKVKAMKNYWEPVVYLDISNMACKLCPDKVTDLYDMIDHLIEKHDVVYNKDIGVCMVAFKLDNFNVSCLACGANFFTFGPLLHHTNKDHKGTSVILCDVCGQHFKHANLLRLHVKTVHENAGLLCPDCGEKFETRSKLKTHQKNQHDLEKKYKCLVCSQTFQSHYKRSRHMASEHKNRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICSVCGWRAFTSNRLQNHMYKHSGEKNFKCDACDKAFTTKKIMKAHFARMHKTPQQPIMPYNHPYGGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01208608;
- 90% Identity
- -
- 80% Identity
- -