Basic Information

Insect: Petrophora chlorosata
Gene Symbol: -
Assembly: GCA_951640565.1
Location: OX621190.1:10369902-10378360[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.039 3.5 9.1 0.2 1 23 203 226 203 226 0.95

2 11 0.0045 0.4 12.0 4.7 1 19 289 307 289 312 0.92

3 11 1.7 1.6e+02 3.9 0.4 6 23 322 339 320 339 0.96

4 11 0.0014 0.12 13.7 0.3 3 23 347 367 345 367 0.96

5 11 1.5e-06 0.00013 23.0 1.0 1 23 375 397 375 397 0.99

6 11 0.0008 0.073 14.4 1.5 1 23 406 429 406 429 0.97

7 11 0.004 0.36 12.2 0.1 1 23 435 457 435 457 0.97

8 11 1.9e-06 0.00017 22.7 1.9 1 23 463 485 463 485 0.97

9 11 0.00043 0.039 15.2 1.0 1 23 490 512 490 512 0.98

10 11 3.3e-06 0.0003 21.9 4.2 1 23 518 540 518 540 0.97

11 11 0.00026 0.023 15.9 2.1 2 23 547 569 546 569 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.039	3.5	9.1	0.2	1	23	203	226	203	226	0.95
2	11	0.0045	0.4	12.0	4.7	1	19	289	307	289	312	0.92
3	11	1.7	1.6e+02	3.9	0.4	6	23	322	339	320	339	0.96
4	11	0.0014	0.12	13.7	0.3	3	23	347	367	345	367	0.96
5	11	1.5e-06	0.00013	23.0	1.0	1	23	375	397	375	397	0.99
6	11	0.0008	0.073	14.4	1.5	1	23	406	429	406	429	0.97
7	11	0.004	0.36	12.2	0.1	1	23	435	457	435	457	0.97
8	11	1.9e-06	0.00017	22.7	1.9	1	23	463	485	463	485	0.97
9	11	0.00043	0.039	15.2	1.0	1	23	490	512	490	512	0.98
10	11	3.3e-06	0.0003	21.9	4.2	1	23	518	540	518	540	0.97
11	11	0.00026	0.023	15.9	2.1	2	23	547	569	546	569	0.95

Sequence Information

Coding Sequence: ATGGCTACAAACGTTAAGGAATTGTGTAGATTATGTGCTGGAAAGGATGAATTCTCAAAAGATCTTCTAAATGAAAGTAACAAGCATGTTCTCAAAATGATACAGGATTTTATACAGATTTTTgtatttgaAAACGACAACCTCCCTACAAAAATCTGCTTAAACTGCGAAGACAAAATGGTTTCatttcaaatgtttgtgctggAATGTTACAAAGTTCAGAACAAATTAAGTAAAATGTATGTGGACTCATTGGGAGACTTAGCAGCTGTAAAAGAAGAACAGAGTGCAAATGGGGCAGTGCCAAGTTCAGTTATCAAGTCTGAGgtgAAGGATGAAATAACTGCTGAAGATATTGTCACTGCACTAAAAAATGAAGACACGTTGACAGAAATTAgtttatatgatgatgatgatcaccaTAATGATATTCAACAttttgatgatgacgatgatgatgacgattctTTGGATAATGTTGCCATCGCCACCCTGAAACAgattaaaagaaaacaaataaaacgaaAAGTTGAAAGCAAAATAGATACTGAAAAACTTAATAGTATTTTAAAGACCTctaattttaaagttaaagATCTTGTGAAGTTTGAATGTGTGTTATGTGAAGAGAGACAGAAAAGCTGGGCAAATTTACGGAATCACTATGCAAAAGATCACAAAAGTGAGCCCGTTGTGATCTGCCTTTGTGGATacgaaataaaatctaaaagtaTCCTGTACAAACATGTATCAGATCACAAACTAGAAAGTAAAAAGCTTAACAAAATAGCCGACAGTGAGGATGAGAAGCAAGAACAAGACGATAGCAAATATTCAAATCTTAACGTAAAAGATTTTGTGAGGTTCACATGCACCGAATGTGAGAAGGAATGTTCAAGCTGGTACAGTTTGAAGGCTCACTGTCAAGAGAGGCACGGCATTCTTCCCGTCGTTCAGTGCAGCTGTGGAATCACACTCAAGTCCAAGTCTGTCATGTACAAGCACATACAAGATCATAAAAACCCTAATGTTTTAGCATGCGACAAATGTCCTAGAATAACGAAAACCCTGGCTGCATTGAATAAACACAAAATGAGACATGTTCCGAAGTCTGAAAGAAAATATACGTGCGAATCTTGCGACAAAATATTTACCACGAAAGATGCCCTGAAGTCTCACGAAAGATCGCATATTCCAATAGAAGATAGGAAAATATATCACTGTGAAGTTTGTAATCTCAAGTTCACGACGCGGTCGTCGGCGGCGTCGCACAAGCGCGTCGTGCACGACAAGATCAAGGGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACGGGCGGCGAGCTGCGTCAGCACCGCGCCATCCACAGCGACGCCAAGCCCTTCGTCTGCAGGAAGTGTTCCAAGCCTTTCAAGACGTACTCGAATCTGAAGACGCACATGGACATCCACGAGGAGACGTCGTACGAGTGCTACATCTGCCGGCGCGTGCTCAACAGCCGCCGCACGCTGCGCAAGCATCTGCTGGTGCACGAGGACAAGTGCCGCCACGTCTGCTCCTACTGCAACAAGGCCTTCAAGCGAAGACAGACTCTCAAGGTGCACATGTACACACACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGGTTCGCGTACGCGTCCACGCTGCGCTCGCATCGCCTGCGCTGCCACCCCGACAAGATGGCGGCGCACGCGCACGGCAACTACCAGACATACTCGCATCTCTCTATGCAGGAGGGTTATATCAAGAACGACGTAGTAGCAGTAAGTGTTCCAGCGGCTAAGAACGAGGTCGAGGCTATGTAG
Protein Sequence: MATNVKELCRLCAGKDEFSKDLLNESNKHVLKMIQDFIQIFVFENDNLPTKICLNCEDKMVSFQMFVLECYKVQNKLSKMYVDSLGDLAAVKEEQSANGAVPSSVIKSEVKDEITAEDIVTALKNEDTLTEISLYDDDDHHNDIQHFDDDDDDDDSLDNVAIATLKQIKRKQIKRKVESKIDTEKLNSILKTSNFKVKDLVKFECVLCEERQKSWANLRNHYAKDHKSEPVVICLCGYEIKSKSILYKHVSDHKLESKKLNKIADSEDEKQEQDDSKYSNLNVKDFVRFTCTECEKECSSWYSLKAHCQERHGILPVVQCSCGITLKSKSVMYKHIQDHKNPNVLACDKCPRITKTLAALNKHKMRHVPKSERKYTCESCDKIFTTKDALKSHERSHIPIEDRKIYHCEVCNLKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTGGELRQHRAIHSDAKPFVCRKCSKPFKTYSNLKTHMDIHEETSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFAYASTLRSHRLRCHPDKMAAHAHGNYQTYSHLSMQEGYIKNDVVAVSVPAAKNEVEAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00034073;
90% Identity: -
80% Identity: -