Basic Information

Insect: Petrophora chlorosata
Gene Symbol: -
Assembly: GCA_951640565.1
Location: OX621188.1:21726222-21734586[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1 92 4.6 8.1 1 21 169 189 169 191 0.95

2 11 3.7e-07 3.3e-05 24.9 0.8 1 23 197 219 197 219 0.98

3 11 0.00035 0.031 15.5 0.4 3 23 227 248 226 248 0.97

4 11 0.033 3 9.3 3.3 1 21 254 274 254 276 0.95

5 11 0.00012 0.011 17.0 2.7 1 23 282 304 282 304 0.99

6 11 8.7e-06 0.00078 20.6 3.0 1 23 310 332 310 332 0.98

7 11 0.0058 0.53 11.7 0.5 1 23 340 363 340 363 0.96

8 11 0.013 1.2 10.6 5.0 2 23 370 391 369 391 0.96

9 11 0.00037 0.033 15.5 2.1 1 23 397 419 397 419 0.99

10 11 2.1e-06 0.00019 22.5 1.3 1 23 425 448 425 448 0.95

11 11 8.9e-06 0.00081 20.5 4.3 1 23 462 484 462 484 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1	92	4.6	8.1	1	21	169	189	169	191	0.95
2	11	3.7e-07	3.3e-05	24.9	0.8	1	23	197	219	197	219	0.98
3	11	0.00035	0.031	15.5	0.4	3	23	227	248	226	248	0.97
4	11	0.033	3	9.3	3.3	1	21	254	274	254	276	0.95
5	11	0.00012	0.011	17.0	2.7	1	23	282	304	282	304	0.99
6	11	8.7e-06	0.00078	20.6	3.0	1	23	310	332	310	332	0.98
7	11	0.0058	0.53	11.7	0.5	1	23	340	363	340	363	0.96
8	11	0.013	1.2	10.6	5.0	2	23	370	391	369	391	0.96
9	11	0.00037	0.033	15.5	2.1	1	23	397	419	397	419	0.99
10	11	2.1e-06	0.00019	22.5	1.3	1	23	425	448	425	448	0.95
11	11	8.9e-06	0.00081	20.5	4.3	1	23	462	484	462	484	0.97

Sequence Information

Coding Sequence: ATGCCGCCCGTAAGAAAGTCGTATAGGAACAACAATGCAAAGCATATTATTCATACTGTCATCCCAGAAGAAACAGTCGCAGAAAATGTGGAGGAAGAAGGAGACACCAGCGGTGTCACTTACTTCGTGGACGAAGAAGGGAGATATTACTATCAGCAGGGGAGCAGCATCGCGTCTGTGCCAACCGCTGATGAAAGTACTATAGTACAGGAAGTGACTCAGGTTGATGATACAGCCTCACAAAATGTTGAAACTGAAGCCTATCAAACTGTTACTCTGGTCCCATCCAAGAACAGCAACGGGGAACTCAGCTACGTTCTGGTGGTGCAAGAGGAAAGCCAGCCAATCATCAATGTCAATATAAAGGAGGAGAAAGCAGCGGTGGATGTGTACAACTtcgaggaggaggaggaggagccGTCGGGCGGCGAggagccggcggcggcggtggcggccgAGCCCGCGCCCGTCAAGAAGCGCAAGCCGCGCAGCTCGCGCCCCTCCTTCACCTGCCACTTCTGCGCCTACAGCAGCCACCGCCGGTACCTGCTGATCCGGCACATGAAGTGCCACTCGGAGGTGCGTCCGTTCAAGTGCGACGTGTGCGACCGCGGCTTCAAGACGCAGTCGGCGCTGCAGAACCACACTAACATGCACAACGGCGTCAAGCCGCACGGCTGCAAGTTCTGCGAGGCCACATTCACCACCAGCGGCGAGCTGGTGCGGCACGTGCGCTACAAGCACACGCACGAGAAGCCGCACAAGTGCACCGAGTGCGACTACGCGTCCGTCGAGCTGTCCAAGCTGCGCCGGCACGTGCGCTGCCACACCGGCGAGCGACCCTACCAGTGCCCGCACTGCACGTACGCGTCCCCGGACACGTTCAAGCTGAAGCGGCACCTCCGCACGCACACAGGCGAGAAGCCCTACAAGTGCGACATGTGCAACATGTGCTTCACGCAGTCCAACTCGCTCAAGGCGCACCGGCTCATTCACAACGTGTCGGAGAAGCCGGTGTACGCGTGCGAGCTGTGCCCGGCCAAGTGCGGGCGCAAGACGGACCTGCGCATCCACGTGCAGAAGCTGCACACGTCGGGCCAGCCGCTCAAGTGCAAGCGCTGCGGCAAGTCCTTCCCCGACCGCTACTCCTGCAAGATGCACAACAAGACGCACGAGGGCGAGAAGTGCTACAAGTGCGACCTGTGCCCGTACGCGTCCACGACGCTGCGCCACCTCAAGTCGCATCTCCTCAAGCACACCGACGAGAAGCCCTTCGCGTGCGACGACTGCGACCAGTCCTTCAGGCAGAAGCAGCTGCTCCGGCGACACCAGAACCTGTACCACAACCCGGAGTACGTGCCGAAGCCGCCCAAGGAGAAGACGCACACCTGCCACGAGTGCAGCCGCACCTTCGCGCACAAGGGCAACTTGATCCGTCACCTCGCCGTGCACGACCCGGACTCGGGCCACCAGGAGCGCGCGCTGGCGCTCAAGATTGGACGCCAGAAGAAGGTCAAGTACATCGACGCGGAGACACTCAAGGTGTTGCAGGACGAGAGCCGCAGCAAGACGCAGGTGCTGAAGGTGGGCGTGTCGTCGGAGCTGAAGCGCGGCGAGCTGGTGACCGTCAACGACGGCGATGGCCAGCAGTACGTGGTGCTGGAGGTGATCCAGCTGGAGGACGGCACCGAGCAGCAGGTGGCCGTCGTCGCGCCCGACTACCTCGCCGTGCGACGGAACGCCGACGGCGACGACATGGTCATCGAGGTGGAGAACGAGGGGGAGGACGAGGAGGAGGACGACGAGGAGGAGGCAGGGGAGGAGGAGGCCGAGGAGGTCGACCTCGACATGGAGGTGAAGATGGTAGATGAAGAAGAGGAAGAAGACATGCAAAGTAAGATGCAGAAGCATATTCAGAACCAAGAGAAGGCCGCCGCGGAGCGCTCCATCAAGCTAGAGAAAGAGGTCGTCGCTTGCTTCGGCTTCGAGGAGGAAGAGACGGAGGCAGATGAAGTGTTCCAGGAGAACGTTATTTACGAGCTCGTCTAA
Protein Sequence: MPPVRKSYRNNNAKHIIHTVIPEETVAENVEEEGDTSGVTYFVDEEGRYYYQQGSSIASVPTADESTIVQEVTQVDDTASQNVETEAYQTVTLVPSKNSNGELSYVLVVQEESQPIINVNIKEEKAAVDVYNFEEEEEEPSGGEEPAAAVAAEPAPVKKRKPRSSRPSFTCHFCAYSSHRRYLLIRHMKCHSEVRPFKCDVCDRGFKTQSALQNHTNMHNGVKPHGCKFCEATFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCDMCNMCFTQSNSLKAHRLIHNVSEKPVYACELCPAKCGRKTDLRIHVQKLHTSGQPLKCKRCGKSFPDRYSCKMHNKTHEGEKCYKCDLCPYASTTLRHLKSHLLKHTDEKPFACDDCDQSFRQKQLLRRHQNLYHNPEYVPKPPKEKTHTCHECSRTFAHKGNLIRHLAVHDPDSGHQERALALKIGRQKKVKYIDAETLKVLQDESRSKTQVLKVGVSSELKRGELVTVNDGDGQQYVVLEVIQLEDGTEQQVAVVAPDYLAVRRNADGDDMVIEVENEGEDEEEDDEEEAGEEEAEEVDLDMEVKMVDEEEEEDMQSKMQKHIQNQEKAAAERSIKLEKEVVACFGFEEEETEADEVFQENVIYELV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -