Pchl028263.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621218.1:3272281-3274128[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0018 0.17 13.3 3.4 1 23 49 71 49 71 0.98 2 15 0.3 27 6.3 0.1 2 23 96 118 95 118 0.89 3 15 0.035 3.1 9.2 0.4 2 19 141 158 140 163 0.92 4 15 0.088 7.9 8.0 3.8 1 23 168 189 168 189 0.98 5 15 0.013 1.2 10.6 2.1 1 23 193 215 193 215 0.94 6 15 1e-05 0.00093 20.3 0.9 1 23 217 240 217 240 0.96 7 15 0.028 2.6 9.5 0.5 2 20 247 265 246 267 0.92 8 15 0.031 2.8 9.4 0.1 3 23 371 392 369 392 0.94 9 15 0.0084 0.76 11.2 0.0 2 22 417 437 416 439 0.89 10 15 0.00046 0.042 15.2 0.2 2 23 446 468 446 468 0.94 11 15 0.0028 0.26 12.7 4.9 2 23 473 495 472 495 0.95 12 15 0.019 1.8 10.0 0.9 1 23 500 523 500 523 0.96 13 15 2e-05 0.0018 19.5 3.4 1 23 527 550 527 550 0.97 14 15 0.026 2.4 9.6 2.8 2 23 557 578 556 578 0.96 15 15 5.5e-06 0.00049 21.2 0.9 1 23 584 606 584 606 0.98
Sequence Information
- Coding Sequence
- ATGAAACGAATGGTGATTTACAGCAAGAATCATTTCGTTTCAGATGACGCGTCGAAGCAGAACGCTAACGCAGAAAGGCAGAGAGAGAACTTAAGATTACTGTTCAATCATACTGCTATTATCCCTTTCAAGTGGAAATCCAAGTATACATGTTACTACTgcgaaaaaaattacaacgaaTACGCAAAATTAAGAAAACATACGAAATCACATGGAACATGCACGTTGAAAACTTTAAAACGCGCAAACACTCATCACGAAATAAAGATAGACGTGTCACAAATCAGTTGCGAGCTATGCCAAATGGAATTCAAAAGCTTAACTGCGGTAATAGACCATTTGGTTAACGATCATGATAAATTGTATGATCAGAGCGTTGATGACAGCATACCCTTTCGAGAATATAGATTGTGCGATCTTAGATGCCTGTATTGCAGTATGCAGTTCAGCAGATTCCAAGATTTAGCTCGTCACGATTTGAGGGCTCACGCTAAGGATAGTTTTGAATGTCGACACTGCGGACTACATCTTACAAAGGCTGATTTAACGTTGCATAATAGAACTCACAAAAACCCGTTCGATTGCTTACAATGTGGTAAAAAGTGTATCAGTGAAGCTCAGTTCAGGAGCCATCgtgatttacatttacatcaGTGTAGTCAGTGCGATGCAAAGTTTAAAAGTGCGTCTAACTTGGAGTTACACATTGAAAAGGACCATTCAGACGATGGGTGCACGAAGTGCGATCATTGTTTCAAAGAATTCCCTACAACTGCAGAAATGAGACTACATGTATCTAGTTGCGAAGGCAAAGCCCACATCCCAGAAACGAAAAACGATATGTTGCCTTCGAGTAAAAGAAATAACAGAAACACCCTCTGCAACCAAATAAGGCGAAACATCCAATGCGTTTTAAACATGTCCACCGCAGTCCCCTTTAAGTTCAAAGGAAAATTTAGCTGTTTTTACTGTTCCCATTGGTTGTCAGACTTCGACGAAGTGATTATGCACACGAAAACGGAACATCCAGTTTGTGAGCTACAATCTAACGCGATGCGGATGTGTAAAGGCGAGAAAGCTTGCATCAAGTTGGATATAAAAGGCCTCGCTTGCAAACTCTGCACTCAGCCGTTTTCCGAACTAAGCAGCTTCGTAGACCACGCGATTACTGAGCACGGAGCAGATTATGAAAAGTCTGTACCTCTTAGAGCCTGCTTCGAGGCTTTCCACCTTATCCAAGGCAGGATTCCATGCCCCGAATGTAAGGAGCCTTTCGCATACTTCGCTACGCTATTAAAGCATTTAGGCGCTGAGCATAATCATATCCACAAAGCTGTATGCGCATACTGCGGTAGAGGTTTTCGCACCACGACAAGTTTAGCTATGCACATTTCCAACTCACACACTGGGATGTGCGAATGCACTATTTGCAGTACTAAATGCAAGAATTCACAATCCTTAGCGCGTCACATGGCGCGATATCACGACGTAAAAAACTTCAAATGCTCTCAATGCCCCGAACAGTTTGAGACAATTTACAAGAAGCAGAATCATTTGATCAAGGCTCATAATATTGGGCACAAGTGTGCGTACTGCGGTAAAATGTTTACGAGGAACTCGTTCATGGTGAACCATGTCCGCAGAACGCATTTGAAAGAGAGAACGGTGCCTTGTTCGGTCTGTCACGTGAAATTCTTCGACACCTACCATATGAGACTTCACATGGTGAAACACGAGGGCATAAGAAAGTTCCGATGTGAAATTTGTGGGAAATCATTCCTGAGAGTTAGAAATTTGAAGTCACACATGGATACGCATAAAAAGGGATACTTGCAAGAGGGACTTTAA
- Protein Sequence
- MKRMVIYSKNHFVSDDASKQNANAERQRENLRLLFNHTAIIPFKWKSKYTCYYCEKNYNEYAKLRKHTKSHGTCTLKTLKRANTHHEIKIDVSQISCELCQMEFKSLTAVIDHLVNDHDKLYDQSVDDSIPFREYRLCDLRCLYCSMQFSRFQDLARHDLRAHAKDSFECRHCGLHLTKADLTLHNRTHKNPFDCLQCGKKCISEAQFRSHRDLHLHQCSQCDAKFKSASNLELHIEKDHSDDGCTKCDHCFKEFPTTAEMRLHVSSCEGKAHIPETKNDMLPSSKRNNRNTLCNQIRRNIQCVLNMSTAVPFKFKGKFSCFYCSHWLSDFDEVIMHTKTEHPVCELQSNAMRMCKGEKACIKLDIKGLACKLCTQPFSELSSFVDHAITEHGADYEKSVPLRACFEAFHLIQGRIPCPECKEPFAYFATLLKHLGAEHNHIHKAVCAYCGRGFRTTTSLAMHISNSHTGMCECTICSTKCKNSQSLARHMARYHDVKNFKCSQCPEQFETIYKKQNHLIKAHNIGHKCAYCGKMFTRNSFMVNHVRRTHLKERTVPCSVCHVKFFDTYHMRLHMVKHEGIRKFRCEICGKSFLRVRNLKSHMDTHKKGYLQEGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -