Pchl000752.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621188.1:11261713-11288896[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.023 2.1 9.8 0.6 2 20 669 687 668 689 0.96 2 10 0.77 70 5.0 0.2 2 20 775 793 774 795 0.87 3 10 0.00041 0.037 15.3 1.9 1 23 803 826 803 826 0.97 4 10 7.4e-05 0.0067 17.6 1.8 1 23 849 871 849 871 0.98 5 10 2.1e-06 0.00019 22.5 1.9 1 23 878 900 878 900 0.98 6 10 7e-07 6.3e-05 24.0 1.7 3 23 914 934 912 934 0.96 7 10 1.4e-05 0.0013 19.9 0.6 1 23 940 962 940 962 0.99 8 10 7.6e-07 6.9e-05 23.9 2.5 2 23 969 990 968 990 0.96 9 10 2.6e-07 2.3e-05 25.4 1.5 1 23 996 1018 996 1018 0.99 10 10 9.5e-05 0.0086 17.3 0.1 1 23 1024 1046 1024 1046 0.98
Sequence Information
- Coding Sequence
- ATGTCGCGTAGACGTTATGAGGACGACTGGGAAAGGCGAAAAGAGCACCTCAATAGGAATCTGTTTCAAGAAGTACCAAtcCTGACACCAGTGCGTGAAGAAGAAGGATCATTTGAATCACTTACTTCTCGCGCCTATCCAGCCTCTGCAGTTATCAGAGAACGACCAAATAGCCCTTGTAGTCCACTACCACCCCTCATCATAGAGCGAGAGCCAAATAAACAGAATGACCCTGAAGAATACTACAAGATATTGGAGAAGAAAATGAAGAAAATATATAGAAGACTGTTCATTGAAGGCCGTAGTGATATAAGTGAAGTTTCTTATTCTGATATGAGCACACCTGATCCTTTTACTAATAATTTACCTAAGCATAGAAGAGTTAGTTTTGGTGAGATTAGTAATGATGTACGGAATGATAACTTAGAAACAGATGATATCGATAAACAGCgcgatgaaaatgaaatgtcaaGTGAATCTATATCAATAGATGAGCTACCACAAGATTCTTTAACACCTCAGGATAAAAATGGCTCTGAAGCAAACAAAAGTGAACCAGACATTAATGTGTTAGAAAGAAGTTCCAGTACGGAAATTTTACCAAGAAGCACTACCACCGATAAACTTACAGATGTTGAAAAAGACAGAAGTGCCAGCTCTGAAATCGTCCCAAATATCAATGATGGTGTAGAAAGCTACGTAGAAGATTTTTCGAACAATGACAATACCTTTGCAGCAATTAGCTACGAAAGAGGTAGGGAAAAGGATACATCTTCAGCCAGTGATATAAGCACAGAATCAAGCGGTGCATCATGTTCTGCTGGATACAATCTGATAACATTTAGTGCAGACGTACATAGAAATCCAGAAGAACTAATCATAACTAGAAATTCAGTTGAACAAATTGCAGAAGGATATAATGATGATTCTAACAAAGCTAAAAATGTTTTGGAAAAACTGAAAGAAAATTATGATACTGAGAACCATACTACTTCAAGTGAAGAAGGAGATCCTCAACAGTTTGAAGTTAGAAGGTCTACAAGAATCTATCGATCCATTGGCTCGTCACAAATTGCAgaaggaaatattataaatgatgaattAGATAGAGCTAAAAATGGTTTGGAACAACTGATAGAAAATTATGATACTGAGAACCATACTACTTCAAGTGAAGAAGAAGATCCTCAACAGTTTGAAGTTAGAAGGTCTACAAGAATCTATCGATCCATTGGCTCGTCACAAATTGCAgaaggaaatattataaatgatgaattAGATAAAGCTAAAAATGGTTTGGAACAACTGATAGAAAATTATGATACTGAGAACCATACCGATACTTCAGCTGAAATTGAAGATCCTCAACCCATCGAAGTGATGAGGTTAACCAGAAACTACCCATCTACTGGCTCGCAGCATATGATAGAACCGTCAGACGATAGCATTAGCAATCATGATATAATAGAAAGACCTAGATCACTAGAAGCTCATACAGAGATTGATTCCTCAGAAGAAACAGCACCAATCGCAATGGATTTCGAAGAATCAATTAATTATGATGCTTTACATACATCCCTAATAAATCAAGAAAAATCTTATCAAAATGTATGTCAAAATAATGGTACAAGGAAACGCAAGGGTTCGTGCTCTCCGTCACATCCAGGTAAAAGAATGAGATATGAAGATATCCGCAAAGGCGATGGGCTGCCATCTACAATATGTTGTGAATGTAGGGACAAGGCGGAGAAGGCTTATgattttaaaaagaaatcacAGGAAGCACACATTTCACTCAGAGGTTTTTACAAAAAGGAACCAAAAGTATTAGAGAAAGGAGACGACAGTATTAAAGAGAGCAAACCAATGGGCGTAAAGACTGAACAATCCAattttgatgataatgatgatttctCTGACGCCGACTATGGCTTCCCGCTCAGCAACAATCCAGATGAAGCAAATGCATATGATATAGTCGAATATGAAGACGTGAACGGCACATACTGTCCCATTTGTGGCACTTGCTATGACGGTGACCACAGTCTCTCCAAACACATGTGGGAGTTCCACGCCGATTTAATGGGGCCAAAGAAGAGGGGTCGACCTAAGAAACTTATGACGACgGATTCATCAAACACTTCTACAGAAAAGAACGGGAAAATGGCTTTCGCGACAGAAATACATCTACAGGAACTGTTTGACCCGACAGGTGACATGACCTTGACCATGATCCAAGTGTGCACTTCCTGTACCGGCGTGTATCTCTCGGAAGCTGATCTCATCAATCACCACGACGCCGACCACCCGGAACTTTCTCTGCGATGTAATCATTGTTCCAAGTTATTCGCGTCCGTAAGAACAGCGGCGCGCCACAGAGTTGTCTGTAAGCAGATAGAAAGGATGCACAAGTGTACAACGTGCGGCCTCAAGTTTGCGTACGAGATATCTCTCAACAAACACATACTGAGATACCATCAAGGAGAGAGCGTGTCCGTAGCGTTTATGAGCCGGAAATCGACGAAGACCAACGAAAATGTGCAGTATCAATGCGATACTTGTAACAAAATATTCCATAGGAAAGAAGCTCTGGCGAAACACGCTAAGTTGCACATGCCGAATCAAAAACTGTACGAATGCGATATTTGTCAGAGGAAGTTCAATCGCAGTGATAATTTACGGACTCACAAGAAGATCCATGACGTGGACCGCACGAAGCCGCCCGCTAACAACTGCCTCTGTCTGTACTGCGGCCGCGGCTTCTCCAACTCTTCAAACCTGATCGTGCACATGCGCCGTCACACCGGCGAGAAACCTTACAAGTGTGACTTTTGTGCGAAAGgATTTCCGAGGTCGTCAGATCTGCTGGTTCACCGGAGATCTCACACCGGCGAGAAACCTTGCGTATGTCGCATTTGTGGCAAAGCGTTCTCTCGCAGCAACAAGCTTTCCCGCCACATGCGCGTACACACGGGCCAGCGGCCGTACAAGTGTACTTACTGTGAGAAGGCGTTCTCTCAGAGCAACGACCTCACTTTGCACATACGCCGTCACACAGGCGATAAGCCTTACGTCTGCGAAGTCTGCGGCGAGAGATTCATACAGGGCACGGCTCTGCAGAACCACCGTCGCGCTCACGGCCActtcccgccgccgccgccagatCTCACCACCCTTACCAGCCAAGTGCAAGCCATCACTTACCCCGTATCTAACTTGTCCAACTTGTCCAACTTGGCCAACATCAACATACAACACGACCCTCACATGCCTAACTAG
- Protein Sequence
- MSRRRYEDDWERRKEHLNRNLFQEVPILTPVREEEGSFESLTSRAYPASAVIRERPNSPCSPLPPLIIEREPNKQNDPEEYYKILEKKMKKIYRRLFIEGRSDISEVSYSDMSTPDPFTNNLPKHRRVSFGEISNDVRNDNLETDDIDKQRDENEMSSESISIDELPQDSLTPQDKNGSEANKSEPDINVLERSSSTEILPRSTTTDKLTDVEKDRSASSEIVPNINDGVESYVEDFSNNDNTFAAISYERGREKDTSSASDISTESSGASCSAGYNLITFSADVHRNPEELIITRNSVEQIAEGYNDDSNKAKNVLEKLKENYDTENHTTSSEEGDPQQFEVRRSTRIYRSIGSSQIAEGNIINDELDRAKNGLEQLIENYDTENHTTSSEEEDPQQFEVRRSTRIYRSIGSSQIAEGNIINDELDKAKNGLEQLIENYDTENHTDTSAEIEDPQPIEVMRLTRNYPSTGSQHMIEPSDDSISNHDIIERPRSLEAHTEIDSSEETAPIAMDFEESINYDALHTSLINQEKSYQNVCQNNGTRKRKGSCSPSHPGKRMRYEDIRKGDGLPSTICCECRDKAEKAYDFKKKSQEAHISLRGFYKKEPKVLEKGDDSIKESKPMGVKTEQSNFDDNDDFSDADYGFPLSNNPDEANAYDIVEYEDVNGTYCPICGTCYDGDHSLSKHMWEFHADLMGPKKRGRPKKLMTTDSSNTSTEKNGKMAFATEIHLQELFDPTGDMTLTMIQVCTSCTGVYLSEADLINHHDADHPELSLRCNHCSKLFASVRTAARHRVVCKQIERMHKCTTCGLKFAYEISLNKHILRYHQGESVSVAFMSRKSTKTNENVQYQCDTCNKIFHRKEALAKHAKLHMPNQKLYECDICQRKFNRSDNLRTHKKIHDVDRTKPPANNCLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCAKGFPRSSDLLVHRRSHTGEKPCVCRICGKAFSRSNKLSRHMRVHTGQRPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYVCEVCGERFIQGTALQNHRRAHGHFPPPPPDLTTLTSQVQAITYPVSNLSNLSNLANINIQHDPHMPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -