Basic Information

Insect: Petrophora chlorosata
Gene Symbol: -
Assembly: GCA_951640565.1
Location: OX621218.1:3103918-3105708[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.17 16 7.0 3.6 1 23 100 123 100 123 0.92

2 16 2.3 2.1e+02 3.5 0.2 2 23 151 172 150 172 0.94

3 16 0.1 9.1 7.8 0.7 2 23 195 216 194 216 0.92

4 16 0.013 1.2 10.6 0.0 1 19 220 238 220 240 0.96

5 16 0.042 3.8 9.0 0.3 2 23 250 272 249 272 0.91

6 16 0.058 5.3 8.5 6.5 1 23 280 303 280 303 0.95

7 16 0.00073 0.066 14.5 0.7 1 23 309 332 309 332 0.98

8 16 8.6e-07 7.8e-05 23.7 1.5 1 23 339 361 339 361 0.98

9 16 0.0003 0.027 15.7 1.0 1 23 367 389 367 389 0.99

10 16 0.0018 0.17 13.3 1.1 1 23 395 418 395 418 0.97

11 16 0.16 14 7.2 3.8 2 23 425 446 425 446 0.95

12 16 0.00016 0.015 16.6 1.6 1 23 452 474 452 474 0.99

13 16 0.0026 0.23 12.8 0.6 1 23 484 507 484 507 0.96

14 16 5.2e-06 0.00047 21.3 0.4 1 23 513 535 513 535 0.98

15 16 2.4e-05 0.0022 19.2 4.0 1 23 541 563 541 563 0.98

16 16 0.00016 0.015 16.6 0.5 2 23 570 592 569 592 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.17	16	7.0	3.6	1	23	100	123	100	123	0.92
2	16	2.3	2.1e+02	3.5	0.2	2	23	151	172	150	172	0.94
3	16	0.1	9.1	7.8	0.7	2	23	195	216	194	216	0.92
4	16	0.013	1.2	10.6	0.0	1	19	220	238	220	240	0.96
5	16	0.042	3.8	9.0	0.3	2	23	250	272	249	272	0.91
6	16	0.058	5.3	8.5	6.5	1	23	280	303	280	303	0.95
7	16	0.00073	0.066	14.5	0.7	1	23	309	332	309	332	0.98
8	16	8.6e-07	7.8e-05	23.7	1.5	1	23	339	361	339	361	0.98
9	16	0.0003	0.027	15.7	1.0	1	23	367	389	367	389	0.99
10	16	0.0018	0.17	13.3	1.1	1	23	395	418	395	418	0.97
11	16	0.16	14	7.2	3.8	2	23	425	446	425	446	0.95
12	16	0.00016	0.015	16.6	1.6	1	23	452	474	452	474	0.99
13	16	0.0026	0.23	12.8	0.6	1	23	484	507	484	507	0.96
14	16	5.2e-06	0.00047	21.3	0.4	1	23	513	535	513	535	0.98
15	16	2.4e-05	0.0022	19.2	4.0	1	23	541	563	541	563	0.98
16	16	0.00016	0.015	16.6	0.5	2	23	570	592	569	592	0.96

Sequence Information

Coding Sequence: ATGAAAACCGAAGATGCTGACCCATCTAGAACGAAGATAGAAATTGAATTTCGACCAGAATTGACAGTAAAAAGGATACAATCGCACGTGAAAAAGCCTCGGAAAAGTAGATGCGACAAGGCTAATTTAGAACTGAAGCCCCTTTCAGAGTTGCTTAAGAAAGGCAGATGGTGTAAGAGACCTCCGGAACCTAAGGTAGACCAATCGCTGGAGCTGAGTAAACACCGCCACAACATTGTTACTATCATGCAATACTCAAATGCCACCCCATTCCGAGCATACCACGTCGACGACGGCTTCGCTTGCTGCTTCTGCAACAATTTCTTCAAAAAACCCTTCGACCTTAAGATACACACCATAGAGAAGCACGATAGCCACGACAAAAACAAATTCAAAGAAAGCTCAACTTCTATCTTCACGTACGTTGTGAAACTGGATGTCACAGGACTGTGTTGCAACCTTTGCAACATGGAAATTAACACCCTAGAGGAACTCATCCCACATTTACAAATACATGAGATACCTTTACATACTGATATCAAGGATCAAATTGTATGTTTTAAATTCGTTGACGATGTTATTCGTTGCATATATTGTAGCCAGGAGTTCAGTAACTTCAAATTCTTGTTGGAGCATATGAACGATCATTACAGGAACTATGTGTGCGCAGACTGCGACACGGGCTTCATTAACTATAGGATGCTCTTGGCACATGCGGACGGACAAGATCTCACGGTCGGTGAAGTCAAATGTCCCACTTGCAATGATGTCTTCGATTCGCTTACTAAATTCAAACGCCATGAAATTCTCGCTCATTCTGGCTTTGATCTGAATACGCACAAATGCACGCACTGCTCTCAGACTTTCAAGTCTGACGAACGTTTGAAAGACCACGTTACAAAGAAACACGACGGACAACATGCGTATGTTTGTGGCGGTTGCAAAAAGACATATCCCTCGAAACATATACTAATAGCTCATACAAGAAGAGTGCACTTGCACGAAGAGAAGCAATTCAAATGCGACGTGTGCGGTAAGAGTTTCTATGAACGAAAACTGCTGAAGAATCACATGATCAGACACTCCATCACGCGGGAGTACCAATGCGATGCGTGCGCCAAATTGTTCAAGTCGAAGAAGACTTTGCTCCAACACATACAAACGCATAAAATACGAGGCGAATTCAAATGTCTCGCTTGCGAAGAAACGTTCTTCAGGAAAACCTATCTCGATGATCACATGAGGCAGGTCCACTTGAAAGAAACCAGGGCCAAATGTACATATTGCGACAAGCTCCTATACCAGTCACAGTTGAAACACCACGTTTCGAGACGGCACTCCGACAAACGACAGTTCAAATGCGAGGTGTGCCTTGAAATGTGCAGGTCAAAATACTTGTTGATCCAACACATGGCCACACACACGGATTTCAAACCGCATAAAAAAGAGTTTGAATGCCTTGCTTGTGGTAAGAAGTTTGATCGGAAGATCTACGTTGTGAAACACACGCAGAGAGTTCACTTGTTGGAGAAGAAGTTTGTGTGTGACCAATGCGGTAAAAGGTTTGCCGACACGACAACGTTAAAGAACCACGTGGCGACACACTCTGTGGAAAACAAATTCCAGTGTCACGGGTGTCCTAGAACCTTTAAGACGAAGAAGACTATGATGAACCATGCTCGCAACCATATGGAGGAACGTAAAGTGAAGTGCGAGCTCTGTCACCAGGGTTTCATATACCCTTACCTTTTGAAAGATCATATGAAACAGGCGCACAAGATCTTACCTTAA
Protein Sequence: MKTEDADPSRTKIEIEFRPELTVKRIQSHVKKPRKSRCDKANLELKPLSELLKKGRWCKRPPEPKVDQSLELSKHRHNIVTIMQYSNATPFRAYHVDDGFACCFCNNFFKKPFDLKIHTIEKHDSHDKNKFKESSTSIFTYVVKLDVTGLCCNLCNMEINTLEELIPHLQIHEIPLHTDIKDQIVCFKFVDDVIRCIYCSQEFSNFKFLLEHMNDHYRNYVCADCDTGFINYRMLLAHADGQDLTVGEVKCPTCNDVFDSLTKFKRHEILAHSGFDLNTHKCTHCSQTFKSDERLKDHVTKKHDGQHAYVCGGCKKTYPSKHILIAHTRRVHLHEEKQFKCDVCGKSFYERKLLKNHMIRHSITREYQCDACAKLFKSKKTLLQHIQTHKIRGEFKCLACEETFFRKTYLDDHMRQVHLKETRAKCTYCDKLLYQSQLKHHVSRRHSDKRQFKCEVCLEMCRSKYLLIQHMATHTDFKPHKKEFECLACGKKFDRKIYVVKHTQRVHLLEKKFVCDQCGKRFADTTTLKNHVATHSVENKFQCHGCPRTFKTKKTMMNHARNHMEERKVKCELCHQGFIYPYLLKDHMKQAHKILP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -