Pchl029166.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621219.1:6444022-6445839[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8e-06 0.00016 22.7 2.4 2 23 129 151 128 151 0.94 2 14 0.0047 0.43 12.0 0.6 2 23 158 180 157 180 0.94 3 14 0.00017 0.016 16.5 2.9 2 23 187 209 186 209 0.93 4 14 5e-07 4.5e-05 24.5 1.1 2 23 217 239 216 239 0.96 5 14 3.6e-05 0.0033 18.6 0.8 1 23 245 268 245 268 0.95 6 14 0.00041 0.037 15.3 0.6 1 23 275 298 275 298 0.97 7 14 1.7e-06 0.00015 22.8 2.2 2 23 304 326 304 326 0.96 8 14 0.07 6.3 8.3 3.3 1 23 350 373 350 373 0.97 9 14 0.2 18 6.8 0.4 5 23 386 405 383 405 0.89 10 14 1.2e-06 0.00011 23.3 0.7 2 23 411 433 411 433 0.97 11 14 0.42 38 5.8 2.3 2 23 441 463 440 463 0.92 12 14 2.3e-05 0.0021 19.2 2.0 1 23 468 490 468 490 0.98 13 14 0.0057 0.52 11.7 0.7 1 23 496 519 496 519 0.96 14 14 0.47 43 5.7 0.4 2 20 560 577 559 579 0.85
Sequence Information
- Coding Sequence
- ATGGAGCAAGTGTTCATAAAAAGTGAACATAATATAGAAGTAGAAATCAAGCAAGAACACCTTAATTCTGACGACACAGAATGCAGCGTCAAAACTGAAAATACCTACGGAGAGAATGTCAACAACTTTGAGCCGATTAACTACAACGTAGAAGAAAATGTTAACAGAGCAATGTTATTCACAAATCAACAAGCCAGCAGTGTCTATAATGTAGGAGAAAATCATAATTTCACaacaattttactaaaaaatcaAGAAGCGTTAATGAAACAGGCCCATTTGACCTATACACAAAATATAGAATATCCATTAGATACACAAGGACCGTCAACAAATGTAGACGTTGTaggaaaagtgtatgaaaatggTAAAGTTAACAGGCTCAACTGTGTCCACTGTGATAAGACATTCAAGAACAGAGCAAATCTGAAAAATCATATCAAATACGTACATTCTGAAGATCAGAGCGTTGAATGTACAGAATGCTTCCGTACATTTAAATCTATGCTATACTTGAGGTCTCATGTAAGCTCAGTTCATGCTAAAACTGAGGAAGTCCAATGCGAGCACTGTCAAAAAGTGTTTATGAATAAGAAAAAGTTGAATAATCACATTTATTATACACACCGTCAGCCCGAGGAACAAGTTAGCTGCAAAATATGCTCTAAAACATACAAGAGTCAATACAATTTGAAAATTCACATGAGATACGTACATCCGCAAGGAGACCCACATCCGTGCCCGTTATGTTACAAGACATTCAAAGTGGAAATGCTGCTGCAACGTCACATGAAATGGGCGCATCCAGATGAAGGAATGGTCTACAAATGCCAGGAATGCAACAAAATCCTACCATCAATAGACAGTTACAAAACGCATATGAAAAACGTTCATTTATTCAATAGAGCGACTTGTGACATCTGTAAaagaacatttaaaaataagaattcaTTGGAACGACATATGAAGAATATTCACAAAGGAGAAGAGAGTAAACAAGACATTGCAGTGACAGAGACACCTGTTACACCTCAATCTCCAGGTGGTTACACCTGCCAATTCTGCGAACGAACTCTTCACAACACTACATCATTGTTCTGGCACATAGAACGATTCCACGCTCAAACACAAAACTTAGCCTctaatgtatgtataatatgtatgaaagaattttcagactACGCTGCGTTGCACAGACATTTAACTTCTGTACATTCTTTAGAGACTGCTACATGTAAAATATGTCAAAAGGAGTTCAAATCTCCAATAAACCTTCAAAATCATATAAGGATCACGCATGCACCTCCTGAAGCCACACAAACCTGCGAAGCTTGTCAGAAGACGTTCAAATGTGCTCTGCATCTACGGATGCACATTTTAGCTGTTCACGCTGAAGGAGAATTCCCATGCGATGTCTGCCAAAAGACTTTTGCCTcgacaaaatatttgaataaacaCAAGAAATCACACATCGAATCTAGAGACTACCAATGTGATATATGTCTcaaaatgtacaaaaatatCAACGCAGTAAACAAACACAAGAAACAAGTTCACAACGGCATCAAATGCACTATATGCAATATTAAGCAGACCAATATAGACGATCACATTAAGAAATGTCACCCGGAGTACAGTCAGAGTACGTCGATGCAAAACATAGAGATAGAAGAGATAATGTGCAGTAAATGTGATAAGAAATTAAGTAGTTATGAATACAACGAACATTATCAGAATTGTGAAGGACAAACGAATAAGACTTTACAATCGATTCAAGTGAAAATTGAAATCGAAGAACCAGAAGACGAAACTCTATAG
- Protein Sequence
- MEQVFIKSEHNIEVEIKQEHLNSDDTECSVKTENTYGENVNNFEPINYNVEENVNRAMLFTNQQASSVYNVGENHNFTTILLKNQEALMKQAHLTYTQNIEYPLDTQGPSTNVDVVGKVYENGKVNRLNCVHCDKTFKNRANLKNHIKYVHSEDQSVECTECFRTFKSMLYLRSHVSSVHAKTEEVQCEHCQKVFMNKKKLNNHIYYTHRQPEEQVSCKICSKTYKSQYNLKIHMRYVHPQGDPHPCPLCYKTFKVEMLLQRHMKWAHPDEGMVYKCQECNKILPSIDSYKTHMKNVHLFNRATCDICKRTFKNKNSLERHMKNIHKGEESKQDIAVTETPVTPQSPGGYTCQFCERTLHNTTSLFWHIERFHAQTQNLASNVCIICMKEFSDYAALHRHLTSVHSLETATCKICQKEFKSPINLQNHIRITHAPPEATQTCEACQKTFKCALHLRMHILAVHAEGEFPCDVCQKTFASTKYLNKHKKSHIESRDYQCDICLKMYKNINAVNKHKKQVHNGIKCTICNIKQTNIDDHIKKCHPEYSQSTSMQNIEIEEIMCSKCDKKLSSYEYNEHYQNCEGQTNKTLQSIQVKIEIEEPEDETL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -