Pchl026030.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621214.1:9945580-9973830[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.15 14 7.2 0.2 1 23 469 491 469 491 0.96 2 15 0.00034 0.031 15.5 6.0 1 23 507 529 507 529 0.98 3 15 0.0016 0.14 13.5 4.0 1 23 535 557 535 557 0.98 4 15 0.0066 0.6 11.5 1.8 1 23 564 586 564 586 0.99 5 15 2.3e-05 0.0021 19.2 0.2 1 23 592 614 592 614 0.93 6 15 2.5e-05 0.0023 19.1 0.6 1 23 620 642 620 642 0.96 7 15 2.8e-05 0.0025 19.0 0.8 1 23 648 671 648 671 0.95 8 15 6.6e-06 0.0006 20.9 2.2 1 23 677 700 677 700 0.96 9 15 1.3e-05 0.0012 20.1 0.5 2 23 707 728 706 728 0.97 10 15 4.2e-05 0.0038 18.4 1.8 2 23 737 758 736 758 0.96 11 15 4.2e-05 0.0038 18.4 1.8 2 23 767 788 766 788 0.96 12 15 1.3e-05 0.0012 20.1 0.5 2 23 861 882 860 882 0.97 13 15 4.2e-05 0.0038 18.4 1.8 2 23 891 912 890 912 0.96 14 15 4.3e-05 0.0039 18.4 2.5 1 23 918 940 918 940 0.97 15 15 0.0032 0.29 12.5 0.4 1 23 946 970 946 970 0.91
Sequence Information
- Coding Sequence
- ATGAATCAAAACTGTTTGGTGTGTAATACTCGAGGGCCATTTGAAAAGAATCACATCAAGGATATATTTTCTGACTTGCATACGCTACCTAGTAGTAGGAAACTGCTGGATACTCTGCAGGAGATACTCGAGAAACCTTTGATAGAGAAGAGCGTTCACTCCAAGATATTATGCAGAAGATGCTATAGGACCTGCGTTGAATATGATGGTTTTAAGTCtaaAATGAATATAATAAAGCTAGACATGGCCGATGAATATTCCACAACCATCCAAATACTGGCTCCGGTATCCCTTTTAAAGGAGGAGAAATCCATTAGTACGGTGGTGGTCCCGGCATCTAAACTGCAACCCGTGCCCGCTGACTTCCAGTTAAATTTTGCACATCTAGCTGCTGTAACTCGTAGCAACATTAATACAAAGATGCCCACACCACTTATAAATCTAAAAGTGACCATCGGTTCTTCAGTCTTTACCCAGAGTTTAAAAACATCTACCGTCAAAATCGGCAAACCTGTGGAGACTATCGACTCGACGAACATCGTCACTAGCGTCAATAACGATGACATGGCTGAATGGAATGTCAATATACTGCCTAagGAAATATTCTCAACAAATGAATACACCAGTCAGAATTACGATGGAGATGAAAATGGTGCTGCAGAAAACGGTGATGATGAAGAGAATGAAGAAAATGGCGATCAGAACGAAATGGAGATCGACGAAGaTGGGAGTTTAACTGTGGATCAAGAATTGACGAAAAGTAATGAATTGACGATAGACATcgccgatgtaaagACAGAGGAGATCCACCCCTCGGGCATCCAGTACGTGAACGTGTCCCTgcccggcggcgccggcgcggccggTGCGCGCGGCTCCAAGTACGTACTGGGGAAGCTACAGATATACGACGGTGGGAATGATGACGACGACGAACAACAACACACCATAGTGGTTGACGGCGAAAACGCGTCCCTATTAGAAATGATGGCCGGACAGAAACTTATATACGAGAACGGAGAACTGTCGCTGGTGATGGAAAACGATGATGGGAACGAGGAAGCGGaaaacgatgatgatgatgatggacaagATTCAAACGAGGAGTCTCAAATAGAACTGCAAGTGTCGGGGGACGAAGAAACCGCCAACGCGATCATAGCCGCCGCACAGGAACAAGGCGGTGCGTTTATAAAGGTGGAGTCCGGCGAGATGTACCGCGTGAAGTCAGTGCAGAGCAAGCCGCCGGACAGCTTCGACGTGTCGGCGTTCGTTACCCGCGACGGAAACTACTTCCGGTGCATGCTGTGCCACAAACTGGATCAAACCGAGTCAACAACCACGGAGCTTCTGGATGCTGGGACCATGATGAAACATCTGAAGCACACACACGACGCCAAGATATACATCTGCCAGCTGTGTGGCGCCGGCATGAGGAAACGACAGGACTACACCAAACACATGGCGGACCACTCAAAGAACATATCGACGCAGAAAGGCGCATCGAAAAACAAACTGCACACTTGCTCCGTGTGCCGGAAGTGCTACAACTCGCGCACACTACTACAGGAGCACATGAACACGCACACGGGCGCGCGCCCGCACCGCTGCCCCGCGTGCGGGAAAACCTTCGCCTCCAAGTACACGCACCGGGCGCATCTCAAAACACACCAGGTCCGGCCGCGGCCGTACAAATGCTTGCAGTGCAGCAAGTCGTTCCTGTCGCTGCAGAACCTCTCGCAGCACGAACAGACCCACTCGGGGGTGAAGAACTTTGTCTGCAACATCTGCAACAAAGCGTTCGGCACACAGCACAATCTGGAGGTCCATGGTGTGGTCCACAGCGGCGCGCGGCCGCACGCCTGCACATTCTGCGAGAAGGCATTCGCCAGGAGAGCTGAACTTAACGACCATCTGAGGATACATACCGGCGAGCGTCCGTTTGCGTGCGAGGTGTGCGGCGTGCGGTTCGCGCAGCGCTCGAACCTGCACTCGCACCGCCGCGCCACGCATCTCGACGACAAGCGCCACAAGTGCCCCGACTGTCCCAAGAGATTCAAGCGGAGAAGaTTACTGGAGTACCACATAAAGGCGTCGCACACCGGCGAGCGGCCGCTGCAGTGCAACGTGTGTGGCGCCACCTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGGATACACAGCGGGGAGCGGCCCTACTTCTGTGAGTGCAACGTGTGTGGCGCCACCTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGGATACACAGCGGGGAGCGGCCCTACTTCTGTGAGTGCAACGTGTGTGGCGCCACCTTCGTGTACCCGGAGCACTACAAGAAGCACGTGCGGATACACAGCGGGGAGCGGCCCTACTTCTGTGAGGTACGTCGCACACCGGCGAGCGGCCGCTGCAGTGCAACGTGTGTGGCGCCACCTTCGTGTACCCGGAGCACTACAAGAAGCACGTGCGGATACACAGCGGGGAGCGGCCCTACTTCTGTGAGGTACGTCGCACACCGGCGAGCGGCCGCTGCAGTGCAACGTACGTCGCACACCGGCGAGCGGCCGCTGCAGTGCAACGTGTGTGGCGCCACCTTCGTGTACCCGGAGCACTACAAGAAGCACGTGCGGATACACAGCGGGGAGCGGCCCTACTTCTGTGAGTGCAACGTGTGTGGCGCCACCTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGGATACACAGCGGGGAGCGGCCCTACTTCTGTGAGATCTGCGGCAAATCGTTCAACTCTCGCGACAACCGCAACACGCACCGCTTCACGCACAGCGACAAGAAGCCGTACGAATGCCTCGCGTGCGGACATTCCTACATGCGGAAACGGCTGCTCATCGCGCATATGAACTCCAGTGGTCACCTCGCCGAGTCGATAGTCGTGAACCAACCGAGAGTGACGAGGGTTCACAACTCTGACAATGGCATGGCCACGATTGTGCAGTTAAATGAAGAACATGACGATATATCACAGAACAGCGAGGACAATACTGAAGCCgtGCTTCGTACTTCCGGCAAGTTGGAGCTACTTCCGGAAGACAAAGGCGCCAAAATAACAATAACGAAAACCGAAGGAAACCTATTTATTGATGACAGTGATAACTTGGACGCAGAGAATGCCGGAGATCCAATAATAGAAGCAGTTAGTTCCACGCAGTTGGAAGAAACTAATCAGTTGGCTAACGACGGCGCCGTTATGCGATTCATACAAGTGAAGCTACCCGACGGCAACGACGGGTGGGTGGCGCTCAACGACTGA
- Protein Sequence
- MNQNCLVCNTRGPFEKNHIKDIFSDLHTLPSSRKLLDTLQEILEKPLIEKSVHSKILCRRCYRTCVEYDGFKSKMNIIKLDMADEYSTTIQILAPVSLLKEEKSISTVVVPASKLQPVPADFQLNFAHLAAVTRSNINTKMPTPLINLKVTIGSSVFTQSLKTSTVKIGKPVETIDSTNIVTSVNNDDMAEWNVNILPKEIFSTNEYTSQNYDGDENGAAENGDDEENEENGDQNEMEIDEDGSLTVDQELTKSNELTIDIADVKTEEIHPSGIQYVNVSLPGGAGAAGARGSKYVLGKLQIYDGGNDDDDEQQHTIVVDGENASLLEMMAGQKLIYENGELSLVMENDDGNEEAENDDDDDGQDSNEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSKPPDSFDVSAFVTRDGNYFRCMLCHKLDQTESTTTELLDAGTMMKHLKHTHDAKIYICQLCGAGMRKRQDYTKHMADHSKNISTQKGASKNKLHTCSVCRKCYNSRTLLQEHMNTHTGARPHRCPACGKTFASKYTHRAHLKTHQVRPRPYKCLQCSKSFLSLQNLSQHEQTHSGVKNFVCNICNKAFGTQHNLEVHGVVHSGARPHACTFCEKAFARRAELNDHLRIHTGERPFACEVCGVRFAQRSNLHSHRRATHLDDKRHKCPDCPKRFKRRRLLEYHIKASHTGERPLQCNVCGATFVYPEHYKKHVRIHSGERPYFCECNVCGATFVYPEHYKKHVRIHSGERPYFCECNVCGATFVYPEHYKKHVRIHSGERPYFCEVRRTPASGRCSATCVAPPSCTRSTTRSTCGYTAGSGPTSVRYVAHRRAAAAVQRTSHTGERPLQCNVCGATFVYPEHYKKHVRIHSGERPYFCECNVCGATFVYPEHYKKHVRIHSGERPYFCEICGKSFNSRDNRNTHRFTHSDKKPYECLACGHSYMRKRLLIAHMNSSGHLAESIVVNQPRVTRVHNSDNGMATIVQLNEEHDDISQNSEDNTEAVLRTSGKLELLPEDKGAKITITKTEGNLFIDDSDNLDAENAGDPIIEAVSSTQLEETNQLANDGAVMRFIQVKLPDGNDGWVALND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -