Pchl008325.2
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621194.1:13409095-13418207[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.014 1.2 10.5 0.9 3 23 653 674 652 674 0.90 2 23 2.7 2.4e+02 3.3 1.5 4 23 1031 1052 1029 1052 0.84 3 23 0.066 6 8.4 0.3 1 21 1057 1077 1057 1078 0.96 4 23 6.9 6.2e+02 2.0 0.2 1 23 1119 1142 1119 1142 0.89 5 23 0.0034 0.31 12.4 0.9 3 22 1153 1172 1153 1172 0.96 6 23 0.029 2.6 9.5 0.5 3 23 1223 1244 1221 1244 0.96 7 23 0.0014 0.13 13.6 0.4 1 23 1250 1273 1250 1273 0.95 8 23 0.14 12 7.4 0.0 1 23 1299 1322 1299 1322 0.90 9 23 0.006 0.55 11.6 3.5 1 23 1327 1349 1327 1349 0.97 10 23 0.016 1.4 10.3 0.8 1 23 1355 1378 1355 1378 0.95 11 23 0.0019 0.17 13.2 1.5 1 23 1391 1413 1391 1413 0.97 12 23 0.0002 0.018 16.3 1.8 1 23 1462 1485 1462 1485 0.97 13 23 0.0093 0.84 11.0 1.1 1 23 1550 1573 1550 1573 0.96 14 23 0.0076 0.69 11.3 1.8 2 23 1599 1621 1598 1621 0.95 15 23 0.096 8.7 7.9 0.1 2 23 1627 1649 1626 1649 0.93 16 23 0.011 0.99 10.8 0.2 1 21 1693 1713 1693 1714 0.95 17 23 0.0014 0.12 13.7 0.6 1 23 1724 1746 1724 1746 0.93 18 23 0.00012 0.011 16.9 0.3 2 23 1835 1857 1835 1857 0.93 19 23 8.4e-07 7.6e-05 23.8 1.3 3 23 1864 1884 1863 1884 0.98 20 23 0.0027 0.25 12.7 1.2 1 23 1903 1925 1903 1926 0.95 21 23 0.23 21 6.7 0.0 1 23 1947 1969 1947 1969 0.98 22 23 0.03 2.7 9.4 0.6 1 23 1975 1998 1975 1998 0.95 23 23 0.00028 0.025 15.8 0.4 1 23 2006 2029 2006 2029 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCCCGAGGCGAATTACTGCCGATATATCCTACCACCAGTTCGGATGACTCGGAACCTTCCTTCCTCGCCTCGAAAATCAAAGATTGTGTGTCGGTTCAGATAAACGAAAATGACGAACTGCCGACAAATGTCTGCAGGAAATGCATGGACAATGTCAACAACTGGCATATATTTAAGACTGTGTGTGAaaagacacaaaacaaactacagtCTCTGATTAAAAAGGATGGCAGCCTACTAGAAGAGGTGAAAATAAAGAGTGAACCATTGTCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGCTCATATACAATCATTGAGAATGCTACTGGTTCGGCCAAGTTGCAACCTGAGGGCCCACCAATCTTGGCTTCCTTGGGACTCACACCAAGGAGTGATAAGAAATGTGTGGATCCCCGAATGGACTGGCATCGGGTCCATGCAATACTGGACATGGTTCAAGAAAGTGATATCATTGATTCACTCCAGTCCACAGAGGAGAGTGACATTGTCCACCATTCGGATCACGACTCGGAATCAGAAGGAGAACTCCAACCAGACTTGGAAGACATTTACGTCTACTGCGAACAAGGCTACAAATGCAGAgatcataatattatatcaaaaaGTCCTCGAATATCGGAAACGGCAAGCAATGCAAGAATAAAAGAAGCTAATAAACTAAGAAAACGTAAAGTTATCGCAGTGAAGCATTGTCCTCGACCTAAAAACGCGTGGCAACTGCTGTTCACAGACGATCTACTCGAGCTCATTGTCACGTCAACCAACGAGAATATCGTCAGACACGGTAAAAGTTATTCAACGGCCACTAATGCTAGCGAGATAAGAGCGCTGATCGGAGTTTTATACCTACACGGAATAATGAGACCGACGTATCAGAGCCACAGCGAACTTTGGGACAGCCACTGTGGCATCTCATGCGTGAAAAAAGCTATGAGTTTAGAGCGCTTCAAATTTCTTATTCAGAACATTTGTTTCGACACCCAGAATGATGATTCACTTCAGTTCGACACCATGAAACGAATGAGGAAAGTATTCGAGATCTTCGCCATGAATTGTAGAACAGCCTTCGAAATGGAAACCGTCGCGGTAGTCGATGAGGTCATTGTCCCAGTTTACGGACCTTGTCCGTTTAGATATGATATCGATAACAAGTCGCTGAAACATGGAATTAAAATGGTCCTGCTGATTGATCCGTCTAACTTTTACGTGAGCAATTTGGACGTGATAACTGACCCCTATTTTGGCGCGGAAGAGATTGTGAAGAAAATAACTCAGCATTTGTTCGGGACTGGAAGAACTGTTGTCATGGACAGCTGGTACTTCTCTAAACAATTAATGAACACGCTCAAGAGCTATGATCTGTACACAGTAGCAGCTTTGCATCCTCAAAATGATAAAATACCTCCCCTGTTCTTGTCTCAGTATCGAAAAAGCAGAACATTCATGTCTGGATTCCTCGATGAAGAAGTCTCATTGACGTCTTATGTGGATTCCAATTTGAAATCTATAAATGTTATAACAAATGAGCCCAAGTTTTACAAAAGAGGTCCTAACATCAACCACATAACTGCAGTATCGGTGTACAAGAAAAACCAGTCTGCAGTGGAAGTGCTCGATGTCCTTATGAATTACTACACAACCATGCAGCATACAAATGATTGGACTCTTTCATTGTTCTTTACATTGTTGAATATTGCTTCTGTAAACTCTCAGGGGGTGGAGAGTGAGAAtaatgaagaagaagaagactacGAGGAAGAAATTCCAGAGCCGCCTCAACCTGTAAAGGTCCCACACATGCCTGAAGTCTCCATCACCGTGATGAGACCTACTGGCGAGACGCTCCACGCGCGCCAAGGCATCCAACAACTAGCCTCCAAGGACTGCCTCATCTGCGGACGATCATACAGATACTCCCACAACGCTCGCAGGCACGAACTAGCATCACACAGCTTTGACCGCTacacaaacaaaataacaaacaagAAATCACATCACACACGCATGGTACCCAAACTCAGACCGAACCCTTTCAATCCCAAAGCGCGACTCTTGCCTAACCCTATCAGTCATAAGTTACAATTCATGCAAAAAAATATTCCCGCCAAAATAATACCACAGAAAGTCATTAACCCACCGAAACCGATCCCCATTAAAACTACCAAGGCGACGCAAAACAACCTGCCCTATCCACTGCGCATCAAAGCGCTTAAAGACttacaaataaagaaaaaagaaccGCAAATTTTGAAGACATTACTCACATCGAAACCCGAAGTGTTAGTGTCCGAACCGGAGATATTGAACTCTGGCCCAGAAAGTCCTGAAACGCTAATATCTGAGCCGGAGATTGCGTCCTTCCAAGTGGAAGCTATTCTTTCAGAGCCCAATGAGTATGACCAAAATCAAGAGGAAGAAGGCGATATGGAACAAAATCATCAAAGCCAAAATTACGATACTGTGGATATGGAATCGGATCATGAGATCGAAATCGCCCGCCAACAGGAAAACGAGGGCGAATCGATGGAAAATAATGACGAAAATAGTAACCACGAGGAAGAAAACCACGTAGAAGACAGCGTGAAACAAGGTGAAAGTGACAATGAAGGAGACCAGGATACCGGCGACGGCCAGGCCAATATGGAGGTCGATGAAAGTCATGACCTTCAAGTCGACGATGAAGGTAAAGACGGAGAAGAGAACGAAGAAGGCGAAAATGATGAAAATGacgaaaatgaaataaatcctGAAGCCGAGGAAAATGACGATGACGAAGAACAAGACCTGCCGCCGGCTCCTGTCGTAGAATTAAACGAAGACATGCAGAACAATTCGTCCAGCGAATTGAACGAAGAGGATGAGGAAATAGACGAATCAGCAGCGTTTAACGATACTGCTGATGGAGAAATCGGTGAAGTTAAGGAGCTCGATCCTGACAAAACATACGTAACGAAAGCTCAGAGGGACTTCATAGTCAAATATCGCAACATCATCGAACAAATCAATACGAAACGATGTCTCTGCTGTGACAAGACGTATCCGCGTAGAAAAGCGGTCGTTCAGCATCTACAGAAAAATGGACACAAAGTTCCAAAACATACATGCTACAACTGTGTCGTTACATTCACCCATATCGGTGCTCTACTCAGTCACATGAGAGCGAACGCTTGTACGGATCTTTGGAAGATTATCTTTGACGAGAACGGTATACCCGATGATATGGTGCTAGAAGATGAGCCTAAAATCAAAGTTCAGTCTAAAGACATCTTCAACGCTCGGTCGTATGCGTGCAGACTTTGTCCGGCAAAGTTCCAGTTGAAGCAATCTATAATGAAGCACGTATTGGACGTGCATGAAGATGGGCAATCTGCAGTGCCCCTTGGCTGCGTACACTGCCGAGCCAGCTTTAAAGAAAAATCATTGCTCAAAAAACATATTCGCGTCGGCGAATGCACAGTCTATATTCATTGCGACTTGTGTTCAGATCAATTCTCGAACATGCAAGACTTCAGCGATCACGCTCTGTCGGTTCACGCTGACCACTTCGAAAAATCTGACAATCAAAACAAATGTATCGACGGTCGGGCCACGGACTGTTCCATCTGCGGAAAGAAGAACAGCAACTACTTGAATTTGGTGAAACATTTGAAAATGGTTCACAACGAAGACAGACCTCATTACTGTCAAAACTGCGACGCTAAGTTTGAACAAGCTGCTGACcttaataatcatatttatgTGGAGCATTCACATCGAGCCTTGGGTTTGCAGCCTCACGAGCCTGATATGTCACTGGTAAAGGAAGAAGCAGAGGAGTACCATTATTCTTGTACCGAATGTAACGCGATTTTCGAGACAGTCGACGCTTGGACGGATCATCAAGTAGCGGAACACAACCAAGTTGCCCATCATTGTGACCAGTGCGACAAGAAGTTCTTGAGACCTTCGGAACTCGCTGAGCACAAAAATACCCACTTGCGAGTCAAATTCTATCCATGCAGTGTTTGTCCGAATTCGTACAGCACTCCTCAAAAGCTGTCTGACCATGTCCAACAATGTCACCCCGGGGCGGCAACAAACGCCAATGCGGATACTGAATTCTTCTGCGACATATGCATTCGATCATTCAAAAGCAGACAAGCATTCTCAAATCACATGCGTATACATGCTAAGGTGCCGACTACTAACAGAAAACCGGGTGAACCTAAAGGATTCGATCCGCGTATTATCGGAAAGCCAATCAAACAATTTACCATGGTGCAACCCGGTTTTGTTAACttcaagccaaatatgaacGTTCCTAATGCGCCTTACTCATGTGATATTTGCGGTAAAGGCTTCATGCATAAGAAAAACATATGGAAGCATAAGAAAGTACTACACGCGGATATAATAAACGATAGAAACGATAGCGAGGAGAATACCATGCACGCCTCAACGGAAGATGACGATTACAATCCTGATGAAAATGGAGCGCTCTCCACGCCCCAGTTCAATAGTTTCAATTTCTCCAATTTTGCCAATGCTGCCAACAGCACGCCTCAGCAACCGCAAAATCAAAATGATGCAATGCCATATTCGTGTGAGCTATGTTTGAAACGATTCCCGCTAAGAACCAGTTTGTGGAAACACAAACGCGCTAAACATGGAATCGTGAATCCTGGCGCCAGCGCCAGTAATGACAACCAAAATCAAGTTACGCCCACAGAGACTGGTCGTTCTAGCTGCACTCTATGCAAAATCACTTTTGCGGACAAGAAATCTTACTATCGGCATAGAAAGAATGTTCACAAAACAGCTGTACAAATGTGCAAAATATGCGGTAAACCACTCAATTCTACTTTAGAACTGTACGAACATCTCAAAGCCGCCCACGCTCGGGAATTGCTCGGTTACAACGCAAACCAAGGCACAAGTAAAACGCAAGATGTGTCTCAGGATCTAGACAACGAATTCGATAACGAGCTAGAATCGACCGATCCCAGCGTGGACTATCAAGCCCGATATCCGTGTGATACCTGTGGCAAACAGTTCGTAGGCCTGCTGGCGCTACAAAACCATCAGTGTATAAATCAGCTTCCTGCGCAACCGCAGACTTTTGACTGCGAAATCTGCCACAAAAGCTACACGTCTATCGCTGCGTTGAAGAGTCATCGCGGTTGGCACTTGCGCTCCCCAGACGGGAAAGCGGCTGCCAACAACAGCGGTCTTTGGATGCCTCAGCACAAAGTGACGAGTAAGGTCAGCAAACACGAGGTCGTCGACGCGGTGCAGTTGGCGCGCGTCTCGCACtcggcgcccgccgccgccgtcacGGCCAAAAGGAGATTGCCGCCGGAGGTCGAAGTAACCGTTGTCAATCCGAACAAAAAGATGCGTTCCGAAGACTCCGTCGATATGGATCAGCAAAACGAAGCGGCAGAAGGGAGGTACTGCACGATCTGCGACAAAGAATTCACAAAACGCGCAGCCTATCAGCGTCACATGGACGAGGTTCATCAACCGAATTCCGTGTTTTGTCCGGTCTGTGATAGGAGTTTCACGCGGAAATCGACGCTTCTCGTGCATATGAAGAAGCATTACGAAGGCGGGGAGGGTAGTACATCCGCCGCCGCACAACTAGAAGACGAGGGTCACACGTGTGATGATTGCGGTGCGCAGTACGATAACGAGAAAGCTTTGAGGGCTCACCGGGCAAGACATCACGCTGAGGAATCGGGCGATTCCGAGGATGATGGGAGTGCGCCGGCGGCGCAGCCGGGCGAGTTTACCTGCGGTCAATGCGGGGACGGTGTTGCCAGCCCGCGCGATCTACTCGCCCATCGCTCCATGCACGCGACTCCAACTAAATTCTTCTGCAACATTTGTAAAGTGTACTTCGCGCGAGCGCTTGACCTTTCGTCGCATACCCGCGCGCGACACTCCGACAACGAAAAAGTCTTTTTCCCGTGTGCCATGTGCGATCGTTTCTATATGAACAAAAAGAGTTTACAACGTCACATCGAAATGGCACATTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIYPTTSSDDSEPSFLASKIKDCVSVQINENDELPTNVCRKCMDNVNNWHIFKTVCEKTQNKLQSLIKKDGSLLEEVKIKSEPLSDEAYDDGVVIDGSYTIIENATGSAKLQPEGPPILASLGLTPRSDKKCVDPRMDWHRVHAILDMVQESDIIDSLQSTEESDIVHHSDHDSESEGELQPDLEDIYVYCEQGYKCRDHNIISKSPRISETASNARIKEANKLRKRKVIAVKHCPRPKNAWQLLFTDDLLELIVTSTNENIVRHGKSYSTATNASEIRALIGVLYLHGIMRPTYQSHSELWDSHCGISCVKKAMSLERFKFLIQNICFDTQNDDSLQFDTMKRMRKVFEIFAMNCRTAFEMETVAVVDEVIVPVYGPCPFRYDIDNKSLKHGIKMVLLIDPSNFYVSNLDVITDPYFGAEEIVKKITQHLFGTGRTVVMDSWYFSKQLMNTLKSYDLYTVAALHPQNDKIPPLFLSQYRKSRTFMSGFLDEEVSLTSYVDSNLKSINVITNEPKFYKRGPNINHITAVSVYKKNQSAVEVLDVLMNYYTTMQHTNDWTLSLFFTLLNIASVNSQGVESENNEEEEDYEEEIPEPPQPVKVPHMPEVSITVMRPTGETLHARQGIQQLASKDCLICGRSYRYSHNARRHELASHSFDRYTNKITNKKSHHTRMVPKLRPNPFNPKARLLPNPISHKLQFMQKNIPAKIIPQKVINPPKPIPIKTTKATQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILSEPNEYDQNQEEEGDMEQNHQSQNYDTVDMESDHEIEIARQQENEGESMENNDENSNHEEENHVEDSVKQGESDNEGDQDTGDGQANMEVDESHDLQVDDEGKDGEENEEGENDENDENEINPEAEENDDDEEQDLPPAPVVELNEDMQNNSSSELNEEDEEIDESAAFNDTADGEIGEVKELDPDKTYVTKAQRDFIVKYRNIIEQINTKRCLCCDKTYPRRKAVVQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRANACTDLWKIIFDENGIPDDMVLEDEPKIKVQSKDIFNARSYACRLCPAKFQLKQSIMKHVLDVHEDGQSAVPLGCVHCRASFKEKSLLKKHIRVGECTVYIHCDLCSDQFSNMQDFSDHALSVHADHFEKSDNQNKCIDGRATDCSICGKKNSNYLNLVKHLKMVHNEDRPHYCQNCDAKFEQAADLNNHIYVEHSHRALGLQPHEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSDHVQQCHPGAATNANADTEFFCDICIRSFKSRQAFSNHMRIHAKVPTTNRKPGEPKGFDPRIIGKPIKQFTMVQPGFVNFKPNMNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEDDDYNPDENGALSTPQFNSFNFSNFANAANSTPQQPQNQNDAMPYSCELCLKRFPLRTSLWKHKRAKHGIVNPGASASNDNQNQVTPTETGRSSCTLCKITFADKKSYYRHRKNVHKTAVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGTSKTQDVSQDLDNEFDNELESTDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQLPAQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDAVQLARVSHSAPAAAVTAKRRLPPEVEVTVVNPNKKMRSEDSVDMDQQNEAAEGRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDRSFTRKSTLLVHMKKHYEGGEGSTSAAAQLEDEGHTCDDCGAQYDNEKALRAHRARHHAEESGDSEDDGSAPAAQPGEFTCGQCGDGVASPRDLLAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -