Pchl009524.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621195.1:16283388-16290808[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0022 0.2 13.0 0.3 1 23 8 30 8 30 0.93 2 23 1.2 1.1e+02 4.4 0.3 1 20 50 69 50 71 0.88 3 23 0.00011 0.01 17.0 1.8 1 23 92 114 92 114 0.96 4 23 0.76 69 5.0 0.1 5 23 122 141 119 141 0.95 5 23 0.0049 0.44 11.9 0.6 1 23 221 244 221 244 0.95 6 23 0.0021 0.19 13.0 0.3 1 23 250 272 250 272 0.93 7 23 0.00014 0.013 16.8 2.2 1 23 278 300 278 300 0.98 8 23 0.00015 0.013 16.7 2.6 1 23 306 328 306 328 0.97 9 23 0.0071 0.64 11.4 0.8 1 23 334 356 334 356 0.97 10 23 0.0015 0.13 13.6 0.1 1 23 362 384 362 384 0.97 11 23 0.01 0.91 10.9 0.9 1 23 390 412 390 412 0.96 12 23 6.4e-05 0.0058 17.9 0.1 1 23 417 440 417 440 0.97 13 23 0.00055 0.05 14.9 1.7 1 23 447 470 447 470 0.97 14 23 2.2 2e+02 3.6 0.0 2 23 478 499 477 499 0.88 15 23 0.00035 0.031 15.5 3.0 1 23 505 527 505 527 0.97 16 23 0.00055 0.05 14.9 2.3 1 23 535 558 535 558 0.97 17 23 0.0014 0.12 13.7 0.5 2 20 562 580 561 582 0.92 18 23 0.57 52 5.4 3.1 2 23 586 607 585 608 0.93 19 23 0.00041 0.037 15.3 2.5 1 23 617 640 617 640 0.98 20 23 0.021 1.9 9.9 0.7 1 20 647 666 647 666 0.94 21 23 0.018 1.7 10.1 0.3 2 21 675 694 674 695 0.94 22 23 7.4e-05 0.0067 17.7 1.2 2 23 703 724 702 724 0.96 23 23 0.65 59 5.2 0.2 2 18 730 746 729 746 0.91
Sequence Information
- Coding Sequence
- ATGCAGCCTAACAGTGAAACATACTCATGCAGAGCCTGCACAAAGATATTCTCTACAAAAGAAGATCTTGAGGAACATTCAGAATGGCATAACTTGCAGAAAgaatatATTCCAAATCCACATGTTAAATTGGAGCGTGTGTCCATATTCAAATGTGGTACTTGCACAAGAGGGTTTCTCAATCAAAACGTGTTAACAGAACatgaaaataaatgtcttaaaaatGATTTAGACTCAACTTCCGAGgacaacaataataaatttgttaaatCCTACAAATGTGAACACTGTGACTGGAGATTTGTAAAGAAAAGTACTCTTGACACTCACTCTATTATCCACAAGCCGTTTCCAAATATATGTGAGTGTGGCATCGGATACTACAAGAAGCAAGATCTGGATAGCCATCGAAGACTTGTCCATTCACAATCCAAGCCCACCGCCCCAAAACTCACTCCCAAAATTCAATACAAGACTGATTCGGAACTCGAAGTGTCAGACAATGAAGACGGTGACAATTCGAGAAGCAAAGTGAGACCGAGACTGAAGGCTGAACTATATtacaaaactaaacaaaaaagaaaaaagcaaaacaaaatcaaacgaAGTTACAAAAAGGACAAAGAAAATGTGGCTATTGAACAAAACGAGTCAGGACAGTTCATATGCCCCATTTGTGCAAATACATTTGCCACCAAAAAATGTGTAACCAACCATATTAACCTGATCCATAACTCAGAGCGTCAGTACGCTTGCATCGAATGCCCGAAGAAGTATAGCAGCCCACGACAACTAGCGGAGCACAAGAAGAGACACGCGGGCATCAAGGATTACCCCTGCTCCGTCTGCCACAAATCATTCTACACCAAAGCTTACTCAGAGCGACACATGATGATTCACACAGGAGAAAAACCTTTTGCCTGCCACCTGTGTCCTAGAAGGTTCACTCAGATCAACACGCTCAAGAATCATATTTTTACGCACACAGGCGAGAGGAATTATAAGTGTGAGGCGTGCAATAAACGCTTTTTGTCGAAGGAGCGGCTCAAGCGGCACGCGATCATTCACTCGGGGCAGAAGCCGTTCGAGTGCCGGCGCTGCGGCAAGGGGTTCGCGGACCCGTCCGCACGCGGGCGCCACGAGCTCACGCACACGGGGCGGCGCCCGCACCGCTGCGCGCGCTGCCCCGCCGCCTTCTGCGACATCAGCGCGCTGCGGGCGCACAGCCTGCGCCACGCCGGCGTCACCTTCCCCTGCGCCGTCTGCGGCATCGTCTACAAACGCCGCAGCCAGATGGTCAACCACATCAATTCCGTGCACTCCGAAACACAAAGCACGTACGAATGCGATCACTGCGCTAGGACGTTTAACTTTAAGCCTTATCTTGTGAACCATATAAAGCTCAATCACATGAACACCGGAGTCCGTGTTGAATGTGAGATCTGCGGAGCGAAGGTCGCTCCGGTGGGGCTTAAGAGACACTTGCTTCAGGTCCATGTCAAAAATTTCACGCACGAATGCGAGCTATGCGGAAAACCTTTCTTGCATAAATCGGAGATGAGACAGCATATGCTGCGTCATGATAAAACGAGGGATAGAAATTACGAGTGCGACTACTGCCATAGAGGTTACCCTAACAAGCACGAAGTATGGAAACACATAGTGACCAAGCACTTAGGTATACAGTGTGAGATGTGCAACAAAGCCTTTTCCACGTCGTTGAAATTGAAACTTCACAAATCGAAGGGCTGCTGGCGATGTCCCGTTTGCCACCTCCCGTTCGCTGTTAAACATATAATGGAGCACCACATCACTGTCCATCACGTGCCTCGAAGCGAGCGGATGATGTACGAATGTGAGCACTGTAGCAAACAATTTCCCATCAAAACTCGGCTAAGGACGCACATCAGAAAAGTCCATGAAGAAGTTAAAATTACATACAGCTGCGACCACTGCAATGGAACGTTTAAAAACAAAGATGTGATCAGGAATCATATTTGGGACCGGCATATGTTGAGCCTCTACTGCGACGTTTGCTTGAAGCGGTTCTACAATGAAGCCGAGTTCTCGCGACACAAACGCGCTGGCTGCACGCTGAAGCAGCTGCCTTGCACATTCTGCAATAAGATATTTTCAAGCAACAATACCCTTCGATCCCATCTCTCATCTCACTTTCCAAAGAGAATGGAGTGTGCTACTTGTGgtgttaaatataaaacaagaaGTCTCTACCGACGAGGCGACGCGCGGTGTTCGCAGTTCCATCAGGCGGGCTGTTTGCTACTCAAACATGTAACAAACTGCGATGTCTTCCAGACTACCTTGAATAGTCTAGTTAAAGGCCTTCCTGGCACATAA
- Protein Sequence
- MQPNSETYSCRACTKIFSTKEDLEEHSEWHNLQKEYIPNPHVKLERVSIFKCGTCTRGFLNQNVLTEHENKCLKNDLDSTSEDNNNKFVKSYKCEHCDWRFVKKSTLDTHSIIHKPFPNICECGIGYYKKQDLDSHRRLVHSQSKPTAPKLTPKIQYKTDSELEVSDNEDGDNSRSKVRPRLKAELYYKTKQKRKKQNKIKRSYKKDKENVAIEQNESGQFICPICANTFATKKCVTNHINLIHNSERQYACIECPKKYSSPRQLAEHKKRHAGIKDYPCSVCHKSFYTKAYSERHMMIHTGEKPFACHLCPRRFTQINTLKNHIFTHTGERNYKCEACNKRFLSKERLKRHAIIHSGQKPFECRRCGKGFADPSARGRHELTHTGRRPHRCARCPAAFCDISALRAHSLRHAGVTFPCAVCGIVYKRRSQMVNHINSVHSETQSTYECDHCARTFNFKPYLVNHIKLNHMNTGVRVECEICGAKVAPVGLKRHLLQVHVKNFTHECELCGKPFLHKSEMRQHMLRHDKTRDRNYECDYCHRGYPNKHEVWKHIVTKHLGIQCEMCNKAFSTSLKLKLHKSKGCWRCPVCHLPFAVKHIMEHHITVHHVPRSERMMYECEHCSKQFPIKTRLRTHIRKVHEEVKITYSCDHCNGTFKNKDVIRNHIWDRHMLSLYCDVCLKRFYNEAEFSRHKRAGCTLKQLPCTFCNKIFSSNNTLRSHLSSHFPKRMECATCGVKYKTRSLYRRGDARCSQFHQAGCLLLKHVTNCDVFQTTLNSLVKGLPGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -