Pchl008992.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621195.1:6340840-6370232[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 3.9e-05 0.0035 18.5 2.2 1 23 402 424 402 424 0.97 2 29 0.0021 0.19 13.0 0.9 1 20 430 449 430 452 0.94 3 29 3e-05 0.0027 18.9 5.6 1 23 471 493 471 493 0.98 4 29 0.00014 0.012 16.8 4.1 1 23 499 521 499 521 0.99 5 29 5.2e-05 0.0047 18.1 5.3 1 23 527 549 527 549 0.97 6 29 4.4e-06 0.0004 21.5 6.5 1 23 555 577 555 577 0.98 7 29 1.6e-06 0.00014 22.9 5.8 1 23 583 605 583 605 0.98 8 29 0.00014 0.013 16.7 6.7 1 23 611 633 611 633 0.97 9 29 0.00014 0.013 16.7 6.5 1 23 639 661 639 661 0.97 10 29 6.9e-07 6.2e-05 24.0 1.9 1 23 667 689 667 689 0.98 11 29 7e-05 0.0064 17.7 7.9 1 23 695 717 695 717 0.98 12 29 3.6e-05 0.0032 18.6 6.6 1 23 723 745 723 745 0.98 13 29 1.2e-06 0.00011 23.3 5.8 1 23 751 773 751 773 0.98 14 29 2.9e-05 0.0027 18.9 5.1 1 23 779 802 779 802 0.96 15 29 2.9e-05 0.0027 18.9 5.1 1 23 813 836 813 836 0.96 16 29 2.9e-05 0.0027 18.9 5.1 1 23 847 870 847 870 0.96 17 29 2.7e-05 0.0025 19.0 4.1 1 23 881 904 881 904 0.95 18 29 2.7e-05 0.0025 19.0 4.1 1 23 915 938 915 938 0.95 19 29 0.0001 0.0092 17.2 4.9 1 21 949 969 949 972 0.95 20 29 0.048 4.3 8.8 0.8 8 23 1024 1040 1018 1040 0.93 21 29 0.048 4.3 8.8 0.8 8 23 1058 1074 1052 1074 0.93 22 29 0.048 4.3 8.8 0.8 8 23 1092 1108 1086 1108 0.93 23 29 0.039 3.5 9.1 1.2 8 23 1126 1141 1120 1141 0.94 24 29 1.5e-05 0.0014 19.8 5.2 1 23 1147 1169 1147 1169 0.98 25 29 4.3e-06 0.00039 21.5 6.0 1 23 1175 1197 1175 1197 0.98 26 29 8.4e-05 0.0076 17.5 7.9 1 23 1203 1225 1203 1225 0.97 27 29 8e-06 0.00072 20.7 5.2 1 23 1231 1253 1231 1253 0.98 28 29 0.00047 0.043 15.1 0.3 1 23 1260 1282 1260 1282 0.97 29 29 0.13 12 7.4 5.2 1 23 1292 1314 1292 1314 0.98
Sequence Information
- Coding Sequence
- ATGAATCCGGAACATCATAATATCAACACGGGTGGTGGTCAGCCTCCTGGGAGTTCAGAGTCTCAGGGGCAAAGAGTGCAAGCTGCACAGCAACAGCAGCAAGGAAGCCTGCCTGCGACGACATCTGCCACGGATTTGCGAGTGAATACAGCTGCAGTAAATGTGGCTTTGTCCAGTGTAGCGAAGTATTGGGTGTTTACAAACTTATTTCCTGGACCTATTCCACAAGTCTCAGTGTATGGATTGCCTACTGGAACTAGAATCGAAAATGGAAAACCTGTACAGgaTATTGGTCAGCATGCAAGCATACTTAACGGAGATCCGAACATTATCCTTGGGCATCATGGGGGACAGCCTCAGGTGACAGTGTCTGCTGGGGCACAGCAAATACCTGTGTCACAGATCATTGCCACGCAATCAGGACAGACACATGaAGCTCTGGTGGCTCACAGCCAGCAACAGGAGCTGGCTCAGTCCGGAAGCGCGACGCAAGTGTCAGTCTCCGCCGGGCAGACTCACCAGCAGggtcaTCACTCACAGCACATAATGCAGCAGCAACTTATGGCGCGACCAGAACACACCAATCAACAGATCCAGCTTACCGTCAGCGAAGATGGTATCGTTACCGTCGTTGAGCCCGGGAGCAGTAAGATGGTTGACAAAGAAGAACTTCACGAGACCATCAAATTGCCATCAGACCACACCTTGACTGTTCACCAGTTACAGCAAATTATGGGACAGCAGCTCGGAAGTCAAGTGCTAGAGAACGTGGTCCGCATCGAACAGGCGACCGGCGAGCCCGCTAACATCCTCGTCACTCACAACGCCGACGGCACCACGTCTATCGAAGCGAGCGCTTCTGATCCACTCGCTATCGTGAAGGACGAGAAGACTCAGGCGAAAATGGAGACGGCGCAGTTCGCGATACCTACCGAGATTAAGGACATCAAGGGCATTGACTTGAAGAGCGTAGGAGCGATGGGCATGGAAGGCGCCGTAGTAAAGATATCGACCGGCGCCGACCACGACATGACCGCCATGTACAAAGTCAACGTGGAAGATCTGAACCAACTACTGGCTTATCACGAGGTGTTCGGGAAACTCAATACTGACGGCCAGCCGCAAAATAAGGGTGACGGCATCGAAATCGAAGCGCCAGGAACTAGCCAAGGATTGTCTCAGGAGGAATCGTCGCCCGGACACCATTCCTGCGATATCTGTGGAAAAGTGTTCCAGTTTCGATATCAACTTATAGTTCACAGACGATACCACGGCGAGAGTAAACCCTACACATGCCAAGTGTGCGGTTCATCGTTCGCCAACCCGGTCGAACTTTCGCGACACGGGAAATGCCATCTTGccGGAGATCCAGCCGAAAGACACGCCAAGAGGATGGCTCAAGACAAACCCTACGCCTGCACGACTTGCCACAAAACATTCTCGCGTAAAGAACACCTTGACAACCACGTCCGAAGTCACACTGGAGAAACGCCTTACAGATGCGAGTTTTGCGCGAAAACATTCACCCGCAAGGAGCACATGGTCAACCACGTGAGGAAACACACGGGCGAGACACCGCATCGCTGCGACATTTGCAAGAAAAGCTTCACCAGGAAAGAACACTTTATGAACCACGTCATGTGGCATACAGGTGAAACGCCTCACCAATGCCAAATGTGTGGCAAGAAGTATACTCGAAAGGAGCATTTGTCGAACCATATGCGCTCGCACACGAAAGATACGCCGTACAAATGTGAAATGTGCGGGAAATGTTTTACGAGAAAGGAACACTTCACCAATCACATTATGTGGCATACTGGCGAAACCCCCCACCGTTGCGACTTCTGTTCAAAGACGTTCACCCGCAAGGAGCATCTACTAAACCACGTCCGCCAACACACTGGCGAGTCGCCGCATCGCTGTAACTTCTGTTCCAAGTCCTTCACGAGACGCGAGCATCTTGTCAACCATGTGAGACAACATACAGGGGAGACACCTTTCCAGTGCGGATACTGCCCTAAAGCGTTTACGAGGAAGGACCATCTGGTGAATCACGTCCGGCAACATACCGGGGAATCTCCGCACAAGTGTTCGTTCTGCACGAAATCCTTCACTCGCAAGGAGCACCTCACAAATCACGTGCGGCAACACACGGGCGAGTCCCCTCACCGCTGCACGTACTGCGCTAAGAGCTTCACCAGGAAGGAGCATCTCACCAATCATGTCAGACAGCACACGGGTGAAACGCCACACAAGTGCACGTACTGCCCGCGAGCCTTCTCGCGCAAGGAGCATCTCAACAACCACATGCGGCAACACACCGGCGTCACGCCGCACTCCTGCTCCTACTGCAGCAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTACGTACACAACACGCGGCAACACACCGGCGTCACGCCGCACTCCTGCTCCTACTGCAGCAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTACGTACACAACACGCGGCAACACACCGGCGTCACGCCGCACTCCTGCTCCTACTGCAGCAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTACGTACACAACACGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAGCAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTACGTACACAACACGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAGCAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTACGTACACAACACGCGGCAACACACCGGCGTCACGCCGTACTCCTGCTCCTACTGCAGCAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTGCGTACACAACACGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACCGCAGCAAGAGCTCCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTGCGTACACAACACGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACCGCAGCAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTACGTACACAACACGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACCGCAGCAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTACGTACACAACACGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACCGCAGCAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTACGTACACAACACGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACCGCAGCAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGCAACACACGGGCGAGACCCCCTTCAAGTGCACGTTCTGTTCGAAGTCGTTCTCCCGCAAGGAGCATCTCACCAACCACGTCAACTTGCACACGGGCGAGACGCCGCATAAGTGCCCCTTCTGCACTAAGACATTCTCGAGGAAAGAACATCTCACCAACCATGTCAGAATTCACACAGGCGAATCGCCTCACCGCTGTGACTTCTGCCAAAAGACGTTTACTCGTAAGGAACACCTCACGAACCATTTGAAGCAACACACTGGCGACGCGGCGCATACGTGCAGAGTTTGCTCCAAGGCCTTTACGAGGAAAGAGCATTTGATTACTCATATGAGATCTCACAGTTGCGGCGAGCGGCCTTACAGCTGCGGCGAATGCGGCAAGTCGTTCCCGCTCAAAGGGAACCTCATGTTCCACGAGCGATCGCATCAgaaggcgggcggcggcgcgcgcccaTTCCGCTGCGATGTCTGCTCCAAGGACTTTATGTGCAAAGGACACCTGGTATCACACCGGCGCTCGCACGCGGacgcgggcgcggcgccggcggccgaCCCGCGCCCCGAGGGCGAAGAGGACTGCACCGCCAAGTGCGTTAAGATAGAAGTCGACCCGTTGGAAAGTAAACCCAAGATTACTGAGGAAGCTCGGCCAGCCGAAAATTGTATAGTACCGCAGACGTCGCCAAACAATGCTACTGTGATGCAGATAACCAGCAATCAACAAGTCCGTGCGCCTACCTCAACCGCAGCCGGTATAACGTCTGCTACGTTTACGCACACAGTATCAGCGCAGCACCACGCTGGCACCGCCATTGCGCACCACCCGGTCAGCGTCACCTACTAG
- Protein Sequence
- MNPEHHNINTGGGQPPGSSESQGQRVQAAQQQQQGSLPATTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDIGQHASILNGDPNIILGHHGGQPQVTVSAGAQQIPVSQIIATQSGQTHEALVAHSQQQELAQSGSATQVSVSAGQTHQQGHHSQHIMQQQLMARPEHTNQQIQLTVSEDGIVTVVEPGSSKMVDKEELHETIKLPSDHTLTVHQLQQIMGQQLGSQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKTQAKMETAQFAIPTEIKDIKGIDLKSVGAMGMEGAVVKISTGADHDMTAMYKVNVEDLNQLLAYHEVFGKLNTDGQPQNKGDGIEIEAPGTSQGLSQEESSPGHHSCDICGKVFQFRYQLIVHRRYHGESKPYTCQVCGSSFANPVELSRHGKCHLAGDPAERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCQMCGKKYTRKEHLSNHMRSHTKDTPYKCEMCGKCFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNNHMRQHTGVTPHSCSYCSKSFTRKEHLVNHVRYVHNTRQHTGVTPHSCSYCSKSFTRKEHLVNHVRYVHNTRQHTGVTPHSCSYCSKSFTRKEHLVNHVRYVHNTRQHTGVTPHACSYCSKSFTRKEHLVNHVRYVHNTRQHTGVTPHACSYCSKSFTRKEHLVNHVRYVHNTRQHTGVTPYSCSYCSKSFTRKEHLVNHVRCVHNTRQHTGVTPHACSYRSKSSTRKEHLVNHVRCVHNTRQHTGVTPHACSYRSKSFTRKEHLVNHVRYVHNTRQHTGVTPHACSYRSKSFTRKEHLVNHVRYVHNTRQHTGVTPHACSYRSKSFTRKEHLVNHVRYVHNTRQHTGVTPHACSYRSKSFTRKEHLVNHVRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDAAHTCRVCSKAFTRKEHLITHMRSHSCGERPYSCGECGKSFPLKGNLMFHERSHQKAGGGARPFRCDVCSKDFMCKGHLVSHRRSHADAGAAPAADPRPEGEEDCTAKCVKIEVDPLESKPKITEEARPAENCIVPQTSPNNATVMQITSNQQVRAPTSTAAGITSATFTHTVSAQHHAGTAIAHHPVSVTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -