Pchl003313.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621190.1:7444315-7446210[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-07 0.00011 22.6 0.0 15 42 27 54 16 56 0.88
Sequence Information
- Coding Sequence
- ATGGTCAACAAGTACAAAAGAAAAACTGCTAACGCATCATGGAGCGAGGAAACTATGAAACTCGCTATGGATGAAGCAAAAAAAACGTCCGTCAATGCAGCTGCAAAAAAATTTGGTATCAACTTGTCTACGTTGCAGAGACATATGAAGAAAGGATGCTCCAAAAAGGTACTTGGAAGATTTAAACCAGTTTTCACAGAAGCTCAAGAATTAGAACTGGCCGAGTATATTTTTCACATGGATAACCTGTTTTTTGGATtgacgaaaaaagaatttttggaATTAGTTTTCCAATAtgctgaaaaaaacaaaatcggtCATCCATTCAAAAGCAGGGCTGCGGGTGAAGATTGGTACATGGGCTTCAGGATGCGACATCCCGAAATAACTCTGCGTCGGCCAGAACCAACATCAATCGCACGCGCCAGAGGTTTTAATAGACCTCAAGTTGAACGATTTTTTGATTTACTTGAAGGAGAAATCGAGAAACACAATATCGATGCCACTAGGATCTATAATATGGATGAAACCGGTGTCCAAACTACAAGCAACAAACCTCCAAGAGTCCTATGTAGATCAGGAAAAAAACAAGTTGGCGTTATATCGAGCACCGAAAGAGGCAAACTGACAACGGTAGTATGCTGCTGTAATGCAGCGGGATCCTTTATACCCCCATTCCTAATCTATGGTCGTAAACGAATGGTAGGCAGACTTCTAGAAGGGGCTCCACCGGGGGCAAGAGCTACTTGCAGTGATAATGGATGGATCAACGGGCCAGTATTCTTGGAATGGTTGCGGCACTTCGTGGAGATGATAAGACCAACTGCAGAACAAAAAGTGATCTTGGTTATGGACAATCACGAGTCCCATAAGTACCTGGAGGCATTGGAATATGCGTCGAAAAACCATGTGATATTTGTTTCTCTTGCTCCGCACACAACGCATCGAATGCAACCGCTTGATACGTGTGTCTACGGGCCCTTAAAAAACTACTTCGAGCAAGCGGTTTCTGTGTTCCAAAAAACACACGTCGGACGCATTATTTCCCAATACGAGGTTGCGAAATTGTTTGGTGAAGCGTACATGAAGGCAGCAAGTGCTCAAAATGCAGTGAAAGGGTTCTCATGTACCGGAATATGGCCTACAAACAGGAACATCTTCGATGATTCTGACTACGTACCATCAAGTTTGACTGATAGACCAGAACCAACCCCTGATCCAGCCGATGATGAAGATAGACAGACTATCGTTGAGCCTGAGTCATCAAATTTTCACAGACAAGCTGAAAGACGTGAATCCGGTGATTCTGATCGCACTGTGTCACCAACTGTTCTGGATCATTTAATTGGACAATCTAACTGCGAAACTCCAGTGCCGATGATGTGGGCCCATGAAGCATGCACTGCTTATACAGGCAGAGGGTCATACTATTGTGACATTTGTCAAGAATAA
- Protein Sequence
- MVNKYKRKTANASWSEETMKLAMDEAKKTSVNAAAKKFGINLSTLQRHMKKGCSKKVLGRFKPVFTEAQELELAEYIFHMDNLFFGLTKKEFLELVFQYAEKNKIGHPFKSRAAGEDWYMGFRMRHPEITLRRPEPTSIARARGFNRPQVERFFDLLEGEIEKHNIDATRIYNMDETGVQTTSNKPPRVLCRSGKKQVGVISSTERGKLTTVVCCCNAAGSFIPPFLIYGRKRMVGRLLEGAPPGARATCSDNGWINGPVFLEWLRHFVEMIRPTAEQKVILVMDNHESHKYLEALEYASKNHVIFVSLAPHTTHRMQPLDTCVYGPLKNYFEQAVSVFQKTHVGRIISQYEVAKLFGEAYMKAASAQNAVKGFSCTGIWPTNRNIFDDSDYVPSSLTDRPEPTPDPADDEDRQTIVEPESSNFHRQAERRESGDSDRTVSPTVLDHLIGQSNCETPVPMMWAHEACTAYTGRGSYYCDICQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01172294; iTF_01172301;
- 90% Identity
- iTF_01172302;
- 80% Identity
- -