Pchl006624.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- clz9
- Assembly
- GCA_951640565.1
- Location
- OX621193.1:2602422-2604299[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-09 1.9e-06 28.3 0.0 3 40 16 54 14 58 0.92 2 2 7.2 3.7e+03 -1.4 0.0 31 39 496 505 495 510 0.84
Sequence Information
- Coding Sequence
- ATGCCTCgaaaatatattagaaaaaaagaacaaaggtacACCATTGAAACCTTACAAAATGCGGTACAAGAAattaaagagaaaaaaataacttttcgtCAAGCGGAAGAGAAGTACGGTATTCCCAGGACTACACTGTTTGACCAAGTGAAAAAGGGCTGTGTTACTACTGTCCCAAAGAGAGGTAAAAAGTCAGTTTTTAATGAATCTCAGGAAAACGAACTGGTggaattcattttaaaatcatGCAAAGCCTTCTTTGGGATTACAATTCCTACGCTAAGGAAAATAGCTTTCGATTTTGCCACAGCTaataacataaaacacaatTTCAACACAGATACAAAAATGGCTGGAATGGATTGGTATTATAACTTTATGGCTAGACACCCTAATATATCACTTCGAAGGCCAGAAGCTACTTCATTAAATAGAATCACAGCATTTAACCCTGAAgaagtagatatattttttgataatttgaaaATACTTATGATAAAGTACAGatttaaatcaaattcaatCTGGAATGTAGATGAAACAGGGGTCAGCACTGTACAACGGAATTCCAGAATTCTTGCACCAAAAGGTTTGAAACAAGTCGGCAAATGTACAAGTGCGGAGCGTGGTTCCTTAACTACAGTTATCAACTGTTTTAGCGCTGGAGGCAATTacattccaccatttttcatatttaaaagaaaaagaatgaaTGCACTGCTTATGAAAGACAGTAATAGCAATATGGTAGCTTGTGTTTCCGACTCAGGTTGGATTACTGAGACAATATTCGTAGAGTGGCTTGAGCATTTTAAAGGATTTGCAAAACCATCCGCAGATGATCCCATTTTGCTAGTGTTGGACAATCACGAGAGCCACGTAAGTCTGAGAACTTATAACTTTTGTCGCATGAATTTTATTCATGTTTTGACTTTGCCCCCTCACACATCTCACAGAATGCAGCCGTTGGATTTAACCTTCCATGGGCCACTAAAAACGGCATACAACAGAGAATGTGAATCATTAATGGTCAACAATCCAGGCACCAAAATTACAGTATATGATATTGTAGGTCTTTATACAAAAGCTTTTAACCGAACAACAAGTATAGACAAAGCTATAAATGGCTTTAAGTCTGCTGGAATTCATCCAATGGATCAGGATAAATTTAAAGACACTTTCGCCAGTTTTGGTGATATTATTGCACCAGGACCTTCACTTCAACTGACacaaaccaattttgataacgCAAGCGAAAGAGAGCAGAATAAATCTCAACTCATCTGTGATGCTGCTAATGATAATACTACTAGTCAAAGAGAATCACAAGAAGCATCTCAAGTTTCTAGCAATGATGATAACCTTGATGTACCTGCGACTGAATTAGTACAGGTGATTGATGACAATGATGCTGGTCAAAATCAAAGTACAACAAGTCAAACAAGCCAGTCTTCCTCAGTACCACTTATTGACATAGTGCAGGTACCAACTCTACAAcctaaaagaaaaaaacgattaggtaaaaaaaaacattctattTTTTTCACCAGCACACCGGAAAAAATTAACCTAGTAGAAAAAGAACATAAGAAAatggaaagaaaaagaaagaacctCAAACAAGAAGAGACTAAATCTACAAATACTAAACAAAAGCCGAAAAACACTAAAGAAAAACAACCAAAAGgtgtaagaaatttaaacaattttgtaACTGATAAAGAAAATGATGATTACTTCTGCATCTATTGTCAAGAGAAGTATCGTGACCCACCCAACGAAGACTGGATTATGTGTTTAAAATGCAGGAATTGGGCACATGAGAACTGTACTGCTGGAACTTCTTCCAGAGGCTTTATTTGTGACTTATGTGAATGA
- Protein Sequence
- MPRKYIRKKEQRYTIETLQNAVQEIKEKKITFRQAEEKYGIPRTTLFDQVKKGCVTTVPKRGKKSVFNESQENELVEFILKSCKAFFGITIPTLRKIAFDFATANNIKHNFNTDTKMAGMDWYYNFMARHPNISLRRPEATSLNRITAFNPEEVDIFFDNLKILMIKYRFKSNSIWNVDETGVSTVQRNSRILAPKGLKQVGKCTSAERGSLTTVINCFSAGGNYIPPFFIFKRKRMNALLMKDSNSNMVACVSDSGWITETIFVEWLEHFKGFAKPSADDPILLVLDNHESHVSLRTYNFCRMNFIHVLTLPPHTSHRMQPLDLTFHGPLKTAYNRECESLMVNNPGTKITVYDIVGLYTKAFNRTTSIDKAINGFKSAGIHPMDQDKFKDTFASFGDIIAPGPSLQLTQTNFDNASEREQNKSQLICDAANDNTTSQRESQEASQVSSNDDNLDVPATELVQVIDDNDAGQNQSTTSQTSQSSSVPLIDIVQVPTLQPKRKKRLGKKKHSIFFTSTPEKINLVEKEHKKMERKRKNLKQEETKSTNTKQKPKNTKEKQPKGVRNLNNFVTDKENDDYFCIYCQEKYRDPPNEDWIMCLKCRNWAHENCTAGTSSRGFICDLCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -