Basic Information

Insect: Perizoma flavofasciatum
Gene Symbol: -
Assembly: GCA_958496245.1
Location: OY292448.1:2215236-2225293[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.9e-05 0.0042 17.8 0.3 1 23 7 30 7 30 0.95

2 15 0.00045 0.028 15.3 1.8 1 23 38 61 38 61 0.97

3 15 0.001 0.062 14.2 3.3 2 23 68 89 67 89 0.96

4 15 0.08 4.9 8.2 0.3 3 17 97 113 95 114 0.86

5 15 3 1.8e+02 3.2 4.1 11 23 121 133 119 133 0.90

6 15 0.08 4.9 8.2 0.3 3 17 141 157 139 158 0.86

7 15 3 1.8e+02 3.2 4.1 11 23 165 177 163 177 0.90

8 15 0.08 4.9 8.2 0.3 3 17 185 201 183 202 0.86

9 15 3 1.8e+02 3.2 4.1 11 23 209 221 207 221 0.90

10 15 0.08 4.9 8.2 0.3 3 17 229 245 227 246 0.86

11 15 0.00015 0.0094 16.7 4.6 1 23 271 294 271 294 0.97

12 15 0.0002 0.012 16.4 2.6 2 23 302 324 301 324 0.97

13 15 0.16 9.9 7.2 0.2 1 23 332 355 332 355 0.95

14 15 6.5 4e+02 2.2 1.0 2 20 362 382 361 386 0.89

15 15 0.65 40 5.3 3.7 1 23 1009 1031 1009 1031 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.9e-05	0.0042	17.8	0.3	1	23	7	30	7	30	0.95
2	15	0.00045	0.028	15.3	1.8	1	23	38	61	38	61	0.97
3	15	0.001	0.062	14.2	3.3	2	23	68	89	67	89	0.96
4	15	0.08	4.9	8.2	0.3	3	17	97	113	95	114	0.86
5	15	3	1.8e+02	3.2	4.1	11	23	121	133	119	133	0.90
6	15	0.08	4.9	8.2	0.3	3	17	141	157	139	158	0.86
7	15	3	1.8e+02	3.2	4.1	11	23	165	177	163	177	0.90
8	15	0.08	4.9	8.2	0.3	3	17	185	201	183	202	0.86
9	15	3	1.8e+02	3.2	4.1	11	23	209	221	207	221	0.90
10	15	0.08	4.9	8.2	0.3	3	17	229	245	227	246	0.86
11	15	0.00015	0.0094	16.7	4.6	1	23	271	294	271	294	0.97
12	15	0.0002	0.012	16.4	2.6	2	23	302	324	301	324	0.97
13	15	0.16	9.9	7.2	0.2	1	23	332	355	332	355	0.95
14	15	6.5	4e+02	2.2	1.0	2	20	362	382	361	386	0.89
15	15	0.65	40	5.3	3.7	1	23	1009	1031	1009	1031	0.98

Sequence Information

Coding Sequence: ATGGGACTGGAAAAGATATACGAATGCAAGATTTGTACTAAAGGATACAAAAACAGGGCTGCGTTGAAAATCCACATATCAGAGACACACTTGGACGTGGATGTGAGGAAGTTTCCATGCGGGCAATGTGATCGTCGCTTCAAGAGTAACGCACATAGACAAATGCATATCAAGTCGATCCACGCGCGCGCACTCATCTGCAACTGCCCGGTGTGCGGGCGCCGGCTGCTGAACAAACACAACCTGTCCGCGCACATGCGCACGCACATGCGCGAGCGACCCTTCCTCTGCACGCACGACGGCTGCGGCCGAGCCTTCAAGAACAAGGTAAACCTATACCGTCCTCCGGTAAACCAATACCAACATCAGCACAACCTGTCCGCGCACATGCGCACGCACATGCGCGAGCGACCCTTCCTCTGCACGCACGACGGCTGCGGCCGAGCCTTCAAGAACAAGGTAAACCTATACCGTCCTCCGGTAAACCAATACCAACATCAGCACAACCTGTCCGCGCACATGCGCACGCACATGCGCGAGCGACCCTTCCTCTGCACGCACGACGGCTGCGGCCGAGCCTTCAAGAACAAGGTAAACCTATACCGTCCTCCGGTAAACCAATACCAACATCAGCACAACCTGTCCGCGCACATGCGCACGCACATGCGCGAGCGACCCTTCCTCTGCACGCACGACGGCTGCGGCCGAGCCTTCAAGAACAAGGTAAACCTATACCGTCCTCCGGTAAACCAATACCAACATCAGAATTATCTGCAGAAGCACGCAGCTATCCACAATTCTTCACAGCACTTCTCGTGCAAGTACTGCCAGCGAAAGTTCGCCCGCAAGACGCACGTGCAACGGCACGAGAGGGTGATGCACGAGGAGAGGACACGTCGAGTGGAGTGCCACTACTGCGGCTCCAAaTTCTACTCAAAGAACTATCTACTGAAGCACATCCAGACGAAGCACGTTCACAAGCAGAAATTCAAGTATATCTGCGATATATGCGGTCTTGTTACTCACAACAAGCCCAGTATAGTGATGCACCTCAAGTACGGCCATGCGAACGACCAtGACATGCAATGTAAAATTTGTGACAGCAAGATTGTATATAAGAGACATATATATCTTAAACTGCATTATTGGAAGACACATAATATCAGATACAAGATCACGAGGAAAGCGAATACaaaacaaaaacaagaaaaatctGCCGTTGAAGTTAAAGTTGAGCCCATAGAAGCAGAATCGTATGAAGAGTTACAGCTTATGGATGTGCAAAAACAGGAATCTGCAGAGGAGGGTAACGAGTTCGAATCCCTCGATTACTCAAAGAGCGTGTTATCAGAAGACATTGCAGAATCAGCACTTCGCGAGCGGAGTCACGACAAAGAAGTGGACTTTGATGACTTCTTCATAAGAAACGTTCTCGCTAAGCAGGAGGACATAACTGAAGACGACAATAAAAACGAAGGAGTTGACGTAGAACAGAACCGCTGTGTGAAGCAACGTATCCAAAATATACTGAACAGAACTAAAAAGCTGGAAGAGGCGAAGGTGCTGCGTGAGGAACGTGAACGCGAAGAGAAACTTAAGAATGAGAGAGAAGCAGAAGAGGTGAAGCTgaagagagagaaagagaaacGGGAGATTATCGAGCTGAGGAGAGTGAGGGAGATGTACAATGAGAGAATGAAGGCGGCTGTTACTGAAGGGAAACGGAAAAAAGaacaagtaaaaataaagtacttcAAGAAAAAACCCGAAGATTTAAAGATAGTAGAAACAGTTACTGATGAAATTGATGATAAAAATGCTGAGAGTTCTAGAGATTCTTCTGATAACGATGATACAAATAATGGAAAATGCAATGATTCTACTagtgataaattattaaatcatAATAGTGAACCGATTGAAGATAACTCGGACCTCGAAAAAGTGAACATAGTGCTCAATAAAGGTAACACGGTACGTAATGAAGATAATACGGTACTCGGTGAAAGTAATACGATACCTCATGAAGATAATACGGAACTCAATGAGGGCAACACGATACTTCATGAAGATATCATGAAACTTCATGAAGATAACACGATACTTCGTAAAGATAATGCGGAACTCCATGAAGGAAATATGATACTTCATGAAGATAACATTGAACTCAATGAAAATAAGATAGAAGTTAATGAAGATAGCACAGTATTCAATAGAGAGATACAGCTCAATGAAGTGAACTTAGAACTTAATGAAGAAAACACAAGGCACAATACAGATCATATGTTACTGGCTGAAGTAAACACAGGGctcaataaacaaaatatcgtCCTCACTGAAAATAACACGGAACTCAACGCATCAGAACATAATAATACCGATGACCAAGGTAAAACTATCGATGAAGATTCAGATGTGTCTGATGATGAAGAGGCGAATGAAAGTGATGAAGATATTAAAGAAAGTGGGAAGACAAAGAAAATGGAATTTAAAACACATCAATGCTATGTTTGCTTCAAGCTTTTCCAAAAGAAGCAACAGCTAATCGATCACTGTCAAGAGcattttgatatttgcaacGAGCGTACGCTCACCAAGTGTCCCGTTTGCAACCACGTCAGCTTCAAAAGCTTAGCTGAGCACATGAAGAGAAAACATAAAATCACCATTAAAGTACCTTTTAACAAAATCATAGACAGAAAAAGGACAGACGGTTCCAGATATTGTTACGATGTGGAGGGAACTATTGTAGAAGTTATACCTAGcgttaaaatacttaataagaCGGCCAGCGatgaaatagataaaaaaagacGGGATAAGAACGATAGGAGCGTCGCTAAAACTAAGCTAGTTAAGAAAGGCGATGAATGGATAGTCGAGAAAGAAGCAATAGATATAGAATTCGATGAAATACCCGAACTTACTGATATAGAGctttataaatgtaaagttaCAGAAAATGACGTAGATAGATTAGGACAGTTAAGCCATCTGGCTAAGAAAAAGGGGCTTAAAATGATGTTTCCTTGTTTTAAATGTGAGAAGATCTGTCTAAATTTCAGCGCGCTTAAACTACACAAAAGGAGACATGAAGATAACCCAAAACCATTTAATCCTAAGGTCTATAAAAGATCCGCTAAACCTGAAGTCAAGGCTAAGATAAAACTGAACACCGCAAATAGAACTGCGTTGCCGAAACCCATTTTGAATAAACATAAATGCGACGCTAAACTTAAAGAATTCTATGAAAGCAACATAAGAGGCAGTGATATAGAATTTTGgcagtttttgaaaatatataataaaatggaTCGGGAGAAAGTGAACGATTTCAAAGATTTGGAGGAGAGAACGGATTTTGGAAACCATATAGATTATTATAAGGATgttgaaaaaaattatgatgTAGAAAATGAAATGGAAAATCATTATGGAATAGAAAAGATTGATGAAATGGAAAACGATAATAAAGTAGAAAATAATGATGAAATGGAAAATGATAATGAAGTAGAAATTGATGATGTAATggaaaatgatgatgaaatgggGAATGTAGATCAAGAGATTGATTATGAGAGTGTAAGTGCTCCGATTGCAGTTCAAAAAGCAAAAGGAAAGCCAAAAAATTCCAAAAAGCCTAAGATAAAagataatatcaaaaaaaagaaaaagtag
Protein Sequence: MGLEKIYECKICTKGYKNRAALKIHISETHLDVDVRKFPCGQCDRRFKSNAHRQMHIKSIHARALICNCPVCGRRLLNKHNLSAHMRTHMRERPFLCTHDGCGRAFKNKVNLYRPPVNQYQHQHNLSAHMRTHMRERPFLCTHDGCGRAFKNKVNLYRPPVNQYQHQHNLSAHMRTHMRERPFLCTHDGCGRAFKNKVNLYRPPVNQYQHQHNLSAHMRTHMRERPFLCTHDGCGRAFKNKVNLYRPPVNQYQHQNYLQKHAAIHNSSQHFSCKYCQRKFARKTHVQRHERVMHEERTRRVECHYCGSKFYSKNYLLKHIQTKHVHKQKFKYICDICGLVTHNKPSIVMHLKYGHANDHDMQCKICDSKIVYKRHIYLKLHYWKTHNIRYKITRKANTKQKQEKSAVEVKVEPIEAESYEELQLMDVQKQESAEEGNEFESLDYSKSVLSEDIAESALRERSHDKEVDFDDFFIRNVLAKQEDITEDDNKNEGVDVEQNRCVKQRIQNILNRTKKLEEAKVLREEREREEKLKNEREAEEVKLKREKEKREIIELRRVREMYNERMKAAVTEGKRKKEQVKIKYFKKKPEDLKIVETVTDEIDDKNAESSRDSSDNDDTNNGKCNDSTSDKLLNHNSEPIEDNSDLEKVNIVLNKGNTVRNEDNTVLGESNTIPHEDNTELNEGNTILHEDIMKLHEDNTILRKDNAELHEGNMILHEDNIELNENKIEVNEDSTVFNREIQLNEVNLELNEENTRHNTDHMLLAEVNTGLNKQNIVLTENNTELNASEHNNTDDQGKTIDEDSDVSDDEEANESDEDIKESGKTKKMEFKTHQCYVCFKLFQKKQQLIDHCQEHFDICNERTLTKCPVCNHVSFKSLAEHMKRKHKITIKVPFNKIIDRKRTDGSRYCYDVEGTIVEVIPSVKILNKTASDEIDKKRRDKNDRSVAKTKLVKKGDEWIVEKEAIDIEFDEIPELTDIELYKCKVTENDVDRLGQLSHLAKKKGLKMMFPCFKCEKICLNFSALKLHKRRHEDNPKPFNPKVYKRSAKPEVKAKIKLNTANRTALPKPILNKHKCDAKLKEFYESNIRGSDIEFWQFLKIYNKMDREKVNDFKDLEERTDFGNHIDYYKDVEKNYDVENEMENHYGIEKIDEMENDNKVENNDEMENDNEVEIDDVMENDDEMGNVDQEIDYESVSAPIAVQKAKGKPKNSKKPKIKDNIKKKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -