Pfla005677.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Perizoma flavofasciatum
Gene Symbol
-
Assembly
GCA_958496245.1
Location
OY292424.1:14831289-14847885[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.0023 0.14 13.0 3.5 1 23 396 419 396 419 0.96
2 7 1.3e-05 0.00077 20.2 0.8 2 23 682 703 681 703 0.97
3 7 5.1e-05 0.0031 18.2 1.2 1 23 708 730 708 730 0.97
4 7 3.9e-05 0.0024 18.6 1.8 2 23 737 759 736 759 0.94
5 7 5e-07 3e-05 24.6 1.4 1 23 765 787 765 787 0.99
6 7 3e-05 0.0018 19.0 3.1 1 23 793 815 793 815 0.99
7 7 3.5e-06 0.00021 21.9 0.9 1 23 821 843 821 843 0.98

Sequence Information

Coding Sequence
atgagaaaCGTCGACGCTCATCTCCTGGGGGACAAAATGGATGAGGCGGTCACGCATTACATAAATACGCACCAACCAAGCGAACATGTCCACATAGACACAGATGGAATGCCAATTACTGTTCAGGATGACGGCAGTAGAATCACAGTCATGCACCAGCAAACCTACTCTACTCATCTCTGCAGGCAAGTGTCGGTGAGTGAACCGGTGGGGGAGGGACCATGGAGTGAGGAGTTACTGGACCCTGAAGGGCGCATCGCGGCTATAGTGGCGCATTTAGCGCAGAACTCCAGGACCTCCCATCATCACCCACATCACaagGTACCCGTTGTAAGGAATGAAGTGGACGCATCAGTTATTCTCGATAGCTCAATAAGATTTAATGGACAAAGTTTGgaTCAACAATCGGTGTCCCTCGCGGGGTTACCGCCGATGCAGACCCTGCCGCCGCTCCAGGAGATGAAGCGATGTGAAACGGATTGGTTCAGTGATGATAAGAACAAAAagAGTGAGTCCCAGCTATCGGCGCTGAGCGAGCCGGACGGCCCCGTGCTGGAGCTggggggcggcgggggcggaggGGGCGGGGCGGGCTCGCACAGCCGACAGCAGAGCAGGAAGAGTCTGCCGCACAAGAAGAGGATCTCCAGGAAACTCAAGAGAAATGGCAGCTGCACACCGCAACAGGACTTAGTGGTGATAAACAGCATCGATCCGGTCGTGACTCCCGTCGTGGAAGACGAACAGATACTACCGGACAACTTCGTGGCGCAGCAGCAGTCACACCACATGTCCCACGAGGTCCGTCCTATATTCATCTGTCAAATTTGCGGCGACTTCTACGGCGAGGAACAGCTGAAGTTCTTCCACCACCTGAAGCAGCACTACGAGCCGCACAGCACCATCATCATCGACAACCCCGTCTCCGATCTGGTCATGGACAAGATGACGAACACTTGTATCGTGGACAATGTGGCGACACTGCCAGATTCCATAGTGGAGCTCTCCCTCGAGAACTCCGTCCCGAAGACCATGTACCAGCCCATAGACAAGCACAGCGCCATAGCGCCGCTCGCGTACAACACCATCAAGGTGCAATACTCCATGGCCAGTATGGACAAGGAGCCAGGGCCCGTTGAAGCCGAGAAGACGGACCTGTATGAAACCCTGGACAAGCTGGAGCTCTATAACTGCGGGAAATGCAGCAAAACCTTCCGGAAGCAGAAGCAGTGCGAAGCACATATGAGAGAAGCACATCCTACCAACACTAAATTAGAAGATATGGGAGAATTCAGTGAGCCTGAGGATCTGATGGCTGGCATCCACGTGTGCGTCGGCGAATACGAGCCGCCCTTATTACCACACCTTACGGTCGACAATGGGCACGTGCACCAAGATCACACTAGGCACTGgtaCTCTAGAAATGGAACCCACATCAATCCCTGCGAAGGCTGCAACGATTGCAACCCGGATACCTACTGCGCGGAATGCGACCGCGGCCCGGAAcccacacacaacacacaccccacacaccCCACACACCCCAGCCATCCCGCACACAACACACAGCAGACACACGACACGCATCCCACACACAACACCCACCAGACTCACAACACACACTCCACACAAACTCACGTGTCACAATCGCATACAATCCACGCGGCGGAGGCGCAGCACGCGACGCATCCCTCGCATCCCTCGCATCCCTCGCATCCGCAGCACGACACGCATTCACATGAACAGCCGCCGCTGAAACTGCTCAAAGAGGAAGTCCTCCAAAGGATATTCGAGAGCGAAGTGCCCACACAGCTATCCTACAGCATGATACAGCAGCACGAGCGGAGCCTGCACGAGCAGAACCCGCACGAGCAAAACCCGCACGATCGGAACCCGCACGAGCAGAACCCGCACGAGCAGAGCCCGCACGAGCGGAACCCGCACGAGCAAAGCAACGAGCACGGATACGAGCAGAAACCCAATGTGGACGAGCAGACGCTCAAAATTGAACTCTCAAAGAGCAATGGAAAGCGCAAGCGGCTGGAGTGCAGCGAGTGCGGACGCGTGTTCGCGCACCGGAACAGCCTAATGTACCACATGCTGTCACACGCGGCGCGGCAGCACTCCTGCACACTCTGCCCGAAGACGTTCTTCACCGCAGCCGCACTCAAGATCCACAAAAGGGTTCACAACGGTGACAAGCCATGCAAATGCGAGCTGTGCGGCCGAGATTTCCGGCAGTGGAGCGATCTCAAGTATCACACCATATCACTGCATTCCAATGAGAAACATTTCAAATGCGAGTTCTGTGGAAAGGAATTCGCTAGAAAGTACTCTCTGAACGTCCACCGGCGGATACACACAGGGGAACGGAACTATAAGTGTGACTACTGCAGCAAAACCTTCAGCGCCTCTTCGTACAGACTCACACATATGCGGACACATACTGGTGACCGCCCATACAAATGTGTCCAGTGCGAGAAATCCTTCCGTTCCGCCTTCGACCTCCGTCGACATTTACTAGTCCACGACAAAATACGCAACAGATTCGACGAACACAAACCAAAAGCCAAAGAGAAAAAACCCAAACCCGCGAAGGGAGATACAACAGAGATTACGCCAGAACAgctaatcaaaaaaataaaacttactacACCCACACCGACTACAACACAGAAATCTCCAAAGAAGAAATCAACGAACAAAAGGGGTGCACCAAACGTGACGGTACAAAATCGCGACGGACAATTCAAAATAAACGACTACCCAGATGAATTTGACCGGTCCCAGTTTACGAAATTCAAAGTTGTGTACAGTGAAAGTGATTATAAAGAACCGATCCCTTACAAGATATTGAAAGAAAGTGAAAGAGACGGTTTCGCTGTGCTCAGACCTTTATTACGTGAAGATAGACAGTACAGAGAGAATACAGATGGGAAACTACAAATCTTCACGCACGTTGAAAAGAAAGAATACAATGGGTCTATAGTAACGAACTCTCACGTGCTGGGAGATATCAGAAATTTGGAAAGAGAAGACGCTAGGGAGGTTAGGGGTGATGGTAATATGAATGGGGAGGTTACGGAGAACGGGTTTATAGAGCGATTGACAGCTTTGTATAATGTACCAGCTTGA
Protein Sequence
MRNVDAHLLGDKMDEAVTHYINTHQPSEHVHIDTDGMPITVQDDGSRITVMHQQTYSTHLCRQVSVSEPVGEGPWSEELLDPEGRIAAIVAHLAQNSRTSHHHPHHKVPVVRNEVDASVILDSSIRFNGQSLDQQSVSLAGLPPMQTLPPLQEMKRCETDWFSDDKNKKSESQLSALSEPDGPVLELGGGGGGGGGAGSHSRQQSRKSLPHKKRISRKLKRNGSCTPQQDLVVINSIDPVVTPVVEDEQILPDNFVAQQQSHHMSHEVRPIFICQICGDFYGEEQLKFFHHLKQHYEPHSTIIIDNPVSDLVMDKMTNTCIVDNVATLPDSIVELSLENSVPKTMYQPIDKHSAIAPLAYNTIKVQYSMASMDKEPGPVEAEKTDLYETLDKLELYNCGKCSKTFRKQKQCEAHMREAHPTNTKLEDMGEFSEPEDLMAGIHVCVGEYEPPLLPHLTVDNGHVHQDHTRHWYSRNGTHINPCEGCNDCNPDTYCAECDRGPEPTHNTHPTHPTHPSHPAHNTQQTHDTHPTHNTHQTHNTHSTQTHVSQSHTIHAAEAQHATHPSHPSHPSHPQHDTHSHEQPPLKLLKEEVLQRIFESEVPTQLSYSMIQQHERSLHEQNPHEQNPHDRNPHEQNPHEQSPHERNPHEQSNEHGYEQKPNVDEQTLKIELSKSNGKRKRLECSECGRVFAHRNSLMYHMLSHAARQHSCTLCPKTFFTAAALKIHKRVHNGDKPCKCELCGRDFRQWSDLKYHTISLHSNEKHFKCEFCGKEFARKYSLNVHRRIHTGERNYKCDYCSKTFSASSYRLTHMRTHTGDRPYKCVQCEKSFRSAFDLRRHLLVHDKIRNRFDEHKPKAKEKKPKPAKGDTTEITPEQLIKKIKLTTPTPTTTQKSPKKKSTNKRGAPNVTVQNRDGQFKINDYPDEFDRSQFTKFKVVYSESDYKEPIPYKILKESERDGFAVLRPLLREDRQYRENTDGKLQIFTHVEKKEYNGSIVTNSHVLGDIRNLEREDAREVRGDGNMNGEVTENGFIERLTALYNVPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01170934;
90% Identity
iTF_01170934;
80% Identity
-