Pfla009495.2
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292429.1:11390169-11400040[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.024 1.5 9.8 0.4 2 23 269 290 268 290 0.97 2 11 0.0035 0.21 12.5 4.3 1 23 297 320 297 320 0.94 3 11 0.0065 0.4 11.6 0.3 1 23 351 374 351 374 0.96 4 11 0.00035 0.021 15.6 0.8 2 23 379 401 378 401 0.95 5 11 0.32 20 6.3 0.0 2 20 412 430 412 432 0.94 6 11 0.0015 0.094 13.6 2.7 3 23 442 462 442 462 0.99 7 11 9 5.5e+02 1.7 0.2 5 23 747 766 746 766 0.90 8 11 0.00015 0.009 16.8 4.8 1 23 782 804 782 804 0.98 9 11 0.0012 0.076 13.9 0.2 1 23 810 832 810 832 0.97 10 11 3.5e-05 0.0022 18.7 1.9 1 23 838 860 838 860 0.98 11 11 0.00084 0.051 14.4 1.8 1 23 866 889 866 889 0.95
Sequence Information
- Coding Sequence
- ATGCACAGTTTCAATTCAAGAATCTCGGCAGCTACCATCGGTGAAACATTTTTCAAAGTTCTTGGGATTCCcGTGGGAATCTACAACAAATACATCTGTTTTGAGTGTGCAAGTTTACTTTTCAAATACGAAGAGTTTAAATCAAAATGCTACCGAGCTCAAAATATTTTGGCCTTGTTTGGAGTGGAAGACGCAAAGGAAATCAACAAGTATATTCAAACGGTAGATCGAAAGCAGAAAGGGCTGGTTTCAAAACTATCTACATCATCAATAGAAAATCATGATAATCAAGCTATCATTACTAGTGATGAAAGTAAATTTGCTCAAGTTGAAGATCAGGTTGTAGATGTGTCTATCAtcaaaagtgaatttacagAAAATGAGTcagatgaatttatttttgaagatGGAATCACCTATGAGACCGACTTTCCGCTTTTAAAAGATAAACCTCCGCTCGCTCAAAATACTAAAAGGCAAAAGGAACATGGTAAATTCAAAAGAAAATCTCACAAAAAAACCAAGCTAACTACAGAAACGGAATCTTTAAGTGATGATGAACCTTTAGCTTACAAAGTTACTAAAACATCTGAATTCCAAGAAGTAGATATTGCAAATTGTAAGGAAATAAACATTCCACAAGTTAAAATAAACCTTGGTACTGAAGAATCAAAAGTCAACAAGAAGCTCAAAGATTTTAATGACTTCGAAGATTATGCTacagttatgttcctaaccccAGAGGATGCTAAAAAGGAGGTGTTGTTAAGAAGACAGTCCAATAATTACATAAACGCTCCGTTGAAATGTGATTTGTGTTATCGAGGGTATGAAGCTAAGGTGGCTTTTGAAAACCACATGAAAAAGCATAGCATAGAGTATGGTGCATACAAATGTGATATCTGCCATTTGCGGTTTCCCGAGCAGCGGTACCTTTGCAAGCATCGGCTGGCTTCACATAAACGGAAGTTTTGCTGCAAAATATGCCCCTATGTTTGCTTTTGCATGCATCAAGCGAAAACACATGTGAGTCTTCACAAGGGCAAGAAATATCCTTGCAAAGAATGCGCTGAAATATTCAGCATGCCGAACAGTCTTCTAATGCACAAACGGCAGAAGCACTCGACTGAGTGCGTTTGCGAGCTCTGCGGACAGACATTTGCGACGCCCAGGGGTCTCTACTCCCACCGCATGAAGCTGCATAGAGATCATAGAAGCGAAAAGCTCGGTCCGGAATGCGATGTGTGCAAAATACACTTTGCTACGGAGGCTGCGTGGAAGATTCATCTCGTTCTCTCTTCTAAACACAACGTCAGTAACGGCTGCAAGTTCTGTGGAGAAATCTTCACGACCTCGCAAGAGCTCAAGTGCCATATGCGAGTCCACGCAAGGAAACACGTCAGTCGCGACTTCAAGCCGGGTCCATGCTCTATGTCGCGGCTTCAAGCCGGGTCCATGCTCTATGGTAAGATTCGCAAGGAAACACGTCAGTCGCGACTTCAAGCCGGGTCCATGCTCTATGGTAAATTTCGCAAGGAAACACGTCAGTCGCGGCTTCAAGCCGGGTCCATGCTCTATGGTAAGATTCGCAAGGAAACACGTCAGTCGCGGCTTCAAGCCGGGTCCATGCTCTATGGTAAGATTCGCAAGGAAACACGTCAGTCGCGACTTCAAGCCGGATCCATGCTCTTTGGTAAGATTCGCAAGGAAACACGTCAGTCGCGACTTCAAGCCGGGTTCATGCTCTTTGGTAAGATTCGCAAGGAAACACGTCAGTCGCGACTTCAAGCCGGGTCCATGCTCTTTGGTAAGATTCGCAAGGAAACACGTCAGTCGCGACTTCAAGCCGAGTTCATGCTCTTTGGTAAGATTCGCAAGGAAACACGTCAGTCGCGACTTCAAGCCGGGTCCATGCTCTTTGGTAAGATTCGCAAGGAAACACGTCAGTCGCGACTTCAAGCCGAGTTCATGCTCTTTGGTAAGATTCGCAAGGAAACACGTCAGTCGCGACTTCAAGCTGGGTCCATGCTCTATGGTAAGACTCGCAAGGAAACACGTCAGTCGCGGCTTCAAGCCGGGTCCATGCTCTATGGTAAGACTCGCAAGGAAACACATCAGTCGCGGCTTCAAGTCGGGTCCATGCTCTATGGTAAGATTCGCAAGGAAACACATCAGTCGCGACTTCAAGCCGGGTCCATGCTCTATGGTAAGACTCATAAGGATGAGTCCTTAAACACGCTAtGTGAAAAATGGTTTGAAGATCTCGCCTCGTTCAAATCTCACTTAAGTTCTACCCACCCGCAGTCTGAAGCCGCGAAGAAACTTGACTCAGATCGGACGCCTTTCGTCTGTGAAGTCTGTGGGCGTATGTTCAAGaaGCAGTGTTTCCTAACTTACCACCAGCGGAAACACTCGGGCGAGCGTCCGTACAAGTGTTTAGAATGCGACAAGACGTTCCAATTGGCCGGCGCGCTATCCACGCACAAAGCTGTCCATCTGAACAAACGCACGCATAAATGTGGGATATGCGCCCGCGTGTTCACCTTCAAAAGCGTACTCAACAAGCATATGAAGGTGCATCTAGGCATCCGACCGCACCGATGTGACATTTGTGAAAAATCCTTTATATCTCCGTGCGACGTCAAAGTCCACGTTAAATATGTCCACAACAAAATACCTTGGCCGAAGAGGAACAGGGCTAAACGGGCGGAACCTAGCTTTATACAGTACTAG
- Protein Sequence
- MHSFNSRISAATIGETFFKVLGIPVGIYNKYICFECASLLFKYEEFKSKCYRAQNILALFGVEDAKEINKYIQTVDRKQKGLVSKLSTSSIENHDNQAIITSDESKFAQVEDQVVDVSIIKSEFTENESDEFIFEDGITYETDFPLLKDKPPLAQNTKRQKEHGKFKRKSHKKTKLTTETESLSDDEPLAYKVTKTSEFQEVDIANCKEINIPQVKINLGTEESKVNKKLKDFNDFEDYATVMFLTPEDAKKEVLLRRQSNNYINAPLKCDLCYRGYEAKVAFENHMKKHSIEYGAYKCDICHLRFPEQRYLCKHRLASHKRKFCCKICPYVCFCMHQAKTHVSLHKGKKYPCKECAEIFSMPNSLLMHKRQKHSTECVCELCGQTFATPRGLYSHRMKLHRDHRSEKLGPECDVCKIHFATEAAWKIHLVLSSKHNVSNGCKFCGEIFTTSQELKCHMRVHARKHVSRDFKPGPCSMSRLQAGSMLYGKIRKETRQSRLQAGSMLYGKFRKETRQSRLQAGSMLYGKIRKETRQSRLQAGSMLYGKIRKETRQSRLQAGSMLFGKIRKETRQSRLQAGFMLFGKIRKETRQSRLQAGSMLFGKIRKETRQSRLQAEFMLFGKIRKETRQSRLQAGSMLFGKIRKETRQSRLQAEFMLFGKIRKETRQSRLQAGSMLYGKTRKETRQSRLQAGSMLYGKTRKETHQSRLQVGSMLYGKIRKETHQSRLQAGSMLYGKTHKDESLNTLCEKWFEDLASFKSHLSSTHPQSEAAKKLDSDRTPFVCEVCGRMFKKQCFLTYHQRKHSGERPYKCLECDKTFQLAGALSTHKAVHLNKRTHKCGICARVFTFKSVLNKHMKVHLGIRPHRCDICEKSFISPCDVKVHVKYVHNKIPWPKRNRAKRAEPSFIQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -