Pfla020741.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292448.1:1520186-1540446[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.5 4e+02 2.2 0.8 1 15 236 250 236 254 0.81 2 13 0.039 2.4 9.2 1.0 1 23 267 289 267 289 0.96 3 13 1.7e-05 0.0011 19.7 1.3 1 21 322 342 322 343 0.93 4 13 0.01 0.62 11.0 1.3 2 21 351 370 351 371 0.92 5 13 0.0011 0.066 14.1 0.9 2 23 387 408 386 408 0.94 6 13 0.00035 0.021 15.6 0.2 1 23 413 435 413 435 0.98 7 13 0.0015 0.094 13.6 5.6 1 21 444 464 444 469 0.94 8 13 0.00057 0.035 14.9 1.7 1 23 477 500 477 500 0.92 9 13 0.025 1.5 9.8 0.2 1 23 506 529 506 529 0.87 10 13 0.0074 0.45 11.4 0.4 3 19 542 558 540 559 0.92 11 13 0.092 5.7 8.0 0.9 1 23 572 595 572 595 0.98 12 13 0.092 5.7 8.0 0.9 1 23 680 703 680 703 0.98 13 13 0.092 5.7 8.0 0.9 1 23 788 811 788 811 0.98
Sequence Information
- Coding Sequence
- atgaagGAAATCAATATAAATATCGAAGGTTACAATGTAAACGGAATATGCGTCGGCTGTTTGAACTATAATCGTAAAATGTTTTACGACGACGATGTTAAAGACTGTTTcaaaactattggaaatattgatGTACCAGACGGTCTCACTATCCAGGTGTGCTGGGAATGTCTTGCTGCTGTGAGGACAGTAACTCGTTTCCAAACACAAATACTGGATGCCTTCGATGTACTCATAGAATACTCGAAGCAGCACACATTCCTGAACTCTCCGAAAGACTTCACCCAGTACTCCACAAATCGGCTGATCACCACACCGGTCCAGATACAAGAAACCACTTTGACCGAGGAAGTGGAGATTCAAGTGCATGATGATATCAAAGAAGAGACCAAAGCTGAGAATGCGGATCAGATCTACTTCGAAGATAGTGTGAAATATGAAGAATCTCAGGACATGCAGTTTTCTGAGTTAGCTTCCCAGGAGCCTCCGTCGTCGGACGAGGATATTCAACTGTCTCAGATCAAGGAGCGGAAGGAGAAgaagatcaaaaagaaaaagaaaaaggatAAGACCAAGAAGCCAACGCTGAGCAGAAAACTAAAGAACCTCCCCGAAGACATAGTGGAGCTGTACACCATGTCGGAGGAGGAGATGTGGGCGGTGCGCGCCAGCGACGTGTCCTCCGAGGGGTTCCAGCGGCTGCGGCACAGGTGCGAGCACTGCGTCATCGGATTCAACACATTGAAACTGAAGGAGTACCACGATAATGGAAAGCATAAACCGAAAGCCGGCAAGTCCCACCAGTGCGATGTATGCAAAGCCTACTTCCTAACTAAAGACAATCTCGCCGTTCATCGATCCTTACACATGGCGGCCTACAGATGTCGCCTCTGCAACGTTATAACAACCATGAAGAGGCTGATATCTAACCACGCCTGTGCCAAGAGCATCGCCCCCGAGGAGTTCCCCTGTACCTACTGTGATAAAGTGTTCAGtTCGAAGTCGAAACTGTCGTACCATCGCAGCACCTCGTGCCGCGCGGAGCGACCACAATGCGACTGCTGCGGGAAAGTCTTCGCCAACAAGATGACGCTCAAGTACCATCTCAAACTGTTACCGCTGAAGAAAGAAGACAAGCCTAAAGAAAAGCTATACATACCATGCAAGGGATGTAACAAAATCTTCCATTCCAAGAAGAGCTACAGAGCACATGTCGTGATCCACGAAGGGCACTCGTACCCGTGCCCGATCTGCGGCAAGCTGTTCATGTGGAAGCGAAACCTGTCGCGACACACGCGAGCGCACCGCGACCGCGACGCCGGCGCCACGCACCAGTGTCGCGAGTGCAACAAGACGTTTGCGTCGCGCGACTGCTACAACAACCACATGAAGCTGAGCAAGCGGCACGCCAGCGAGTCCACGTACGTtcaCGAATGTAACTATTGCGGCAAAAAATTCCCCACGAAATGGTGCATGGTGGACCACATAGACTGGGACCACCTTAAGCGTGTCAAATACCAATGTAGCGTCTGCTTTAAGccgTTCAAAACGGCCAAGATAATGGTGGCGCACGTGAACAACATCCACGCGGGACGGCGCCGGGAACCTGACGGAGAGCATCTCTGCGAGGTCTGCGGGAAATCATACAAGACGGTTAAACGACTGAAAGCGCACGTGTGGGCGATGCACACGCAGCGCTCCACAGCCAAGAGCTTCAAGTGCTCCCTCTGCGCCGCCTCCTTCACGTGGCAGACCTCCATCTACAAGCACATGAAGATGATGCACTCCAACAAACGTACCAAGGTATGTCTGAAGCTGTTACTCACACGCAGCGCTCCACAGCCAAGAGCTTCAAGTGCTCCCTCTGCGCCGCCTCCTTCACCGCTCCACAGCCAAGAGCTTCAAGTGCTCCCTCTGCGCCGCCTCCTTCACGTGGCAGACCTCCATCTACAAGCACATGAAGATGATGCACTCCAACAAACGTACCAAGGTATGTCTGAAGCTGTTACTCACACGCAGCGCTCCACAGCCAAGAGCTTCAAGTGCTCCCTCTGCGCCGCCTCCTTCACGTGGCAGACCTCCATCTACAAGCACATGAAGATGATGCACTCCAACAAACGTACCAAGGTATGTCTGAAGCTGTTACTCACACGCAGCGCTCCACAGCCAAGAGCTTCAAGTGCTCCCTCTGCGCCGCCTCCTTCACCGCTCCACAGCCAAGAGCTTCAAGTGCTCCCTCTGCGCCGCCTCCTTCACGTGGCAGACCTCCATCTACAAGCACATGAAGATGATGCACTCCAACAAACGTACCAAGGTATGTCTGAAGCTGTTACTCACACGCAGCGCTCCACAGCCAAGAGCTTCAAGTGCTCCCTCTGCGCCGCCTCCTTCACGTGGCAGACCTCCATCTACAAGCACATGAAGATGATGCACTCCAACAAACGTACCAAGGTGGCGCGCGCGCAGACAGTCAAGAAGCCGGAGTCTTACGACATGCAATACTTCACGCACGCATTGCACTGA
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRKMFYDDDVKDCFKTIGNIDVPDGLTIQVCWECLAAVRTVTRFQTQILDAFDVLIEYSKQHTFLNSPKDFTQYSTNRLITTPVQIQETTLTEEVEIQVHDDIKEETKAENADQIYFEDSVKYEESQDMQFSELASQEPPSSDEDIQLSQIKERKEKKIKKKKKKDKTKKPTLSRKLKNLPEDIVELYTMSEEEMWAVRASDVSSEGFQRLRHRCEHCVIGFNTLKLKEYHDNGKHKPKAGKSHQCDVCKAYFLTKDNLAVHRSLHMAAYRCRLCNVITTMKRLISNHACAKSIAPEEFPCTYCDKVFSSKSKLSYHRSTSCRAERPQCDCCGKVFANKMTLKYHLKLLPLKKEDKPKEKLYIPCKGCNKIFHSKKSYRAHVVIHEGHSYPCPICGKLFMWKRNLSRHTRAHRDRDAGATHQCRECNKTFASRDCYNNHMKLSKRHASESTYVHECNYCGKKFPTKWCMVDHIDWDHLKRVKYQCSVCFKPFKTAKIMVAHVNNIHAGRRREPDGEHLCEVCGKSYKTVKRLKAHVWAMHTQRSTAKSFKCSLCAASFTWQTSIYKHMKMMHSNKRTKVCLKLLLTRSAPQPRASSAPSAPPPSPLHSQELQVLPLRRLLHVADLHLQAHEDDALQQTYQGMSEAVTHTQRSTAKSFKCSLCAASFTWQTSIYKHMKMMHSNKRTKVCLKLLLTRSAPQPRASSAPSAPPPSPLHSQELQVLPLRRLLHVADLHLQAHEDDALQQTYQGMSEAVTHTQRSTAKSFKCSLCAASFTWQTSIYKHMKMMHSNKRTKVARAQTVKKPESYDMQYFTHALH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -