Pfla018802.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292443.1:7468814-7486759[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00019 0.012 16.5 2.5 1 23 360 383 360 383 0.97 2 11 0.093 5.7 8.0 3.6 2 23 389 410 389 410 0.96 3 11 9.4 5.8e+02 1.7 0.3 1 10 414 423 414 427 0.88 4 11 0.0044 0.27 12.1 7.5 1 23 441 464 441 464 0.98 5 11 0.00025 0.015 16.1 0.2 1 23 468 491 468 491 0.96 6 11 0.021 1.3 10.0 0.1 2 20 506 524 505 526 0.92 7 11 0.014 0.88 10.5 2.2 3 23 554 575 552 575 0.89 8 11 0.28 17 6.5 0.0 2 23 585 605 584 605 0.95 9 11 0.00037 0.022 15.5 1.1 1 23 639 662 639 662 0.96 10 11 0.00041 0.025 15.4 4.0 3 23 679 700 677 700 0.96 11 11 0.00085 0.052 14.4 0.0 3 23 713 734 712 734 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAATTAAAACTATGCCGTATATGTCTAAACAAAGATGTGAAGCTGTTCGAACCAAAACAGTACAATTTGCAACATTATTATGAAGAAATAATGCGGAGCAAGATTCTATCAAAAGATGAATTACCCCAGTACTTTTGCTTTGAGTGTGCAGCATTGTTGCAAAAGTATCATAAATTCAAGGAGAAATGTGATTACGGGCAGAATACCCTGAAGAAATTGATGTGTAGCGgatttATGACCTATTATGTAATTGATGACATTCGTAAAAACCGCTCCGACCTGCAGTCTTTAACAGATTACATAAACCATGCAAGTAATAAGCGcataaaaactattaatttaaaatataaagttgaagttgaacctCTCGAAATGGAAAATGTCATTGTAAACTCACTTCCTGATAATGAAGAGGATTTTAAGTATGAATACATTCCTGAGTCTGATCATGACAATGACTTCACAGATGTTACTAAAGAAGAAGATAACAAGACAGAATATCCAGAAATCACGAAAACAGATGTTGATACTGCTGACTCAGACTTAAAAACGTACACTGTTCTCACCAAACcagattttactaaaaaaacccCTGTTTTTACTGAAACTAACCCTGTTCCTACTGAAACCATCCCTGTTTATACAAAATCTGAATCTATCCTCCTAAAAACAGAAAACAGCCCTAATAAAATTGACACAGGTctgaaaaaccttttatttgaGTCAGATTTGGATGATTCATCGAATGATGTTAGCTTTAACATGGATTTAGATGTAGATacagttaaaattaaagttgCAAATGATAGCAAAATAACTACATCAAATAAAGCTTCAAGTAAAAATGCTATAGAACGTCGAAAGAAAGACACAAAAAAGAAAGATGACAAGAAATATGAACTCAGTAAAGCAAAACAGGATGCTGATTCAAAACATAGATTCGTCGGGATAATCCGAGAGCCTAAAGGTGAGTTAAGCAAAGGCAACTGGGACACCAAGCTCTTAACAGAAGAGGAAGCAATGGATCAGTTTAAGAAGCGAGAGTTTGACAGCAAGTACGAGAGGATGGAGTTCAAATGTACTAAATGCTTTAAAGGCTTCTCCAAGAATGATATGTTGTTGAGGCATAATAAGATGTGGCATGATCAgGGTGAGAACGAATGCAGGTTCTGTCATATGCAGTTTAAATGGAAAAGCAAGTTGCAAATCCACATGATGAATCATTATTATATCTACAAATGCCTACGATGCGGCCTGCAGTTTTACCTTAAGAACGGGGCGGTATTCCATGACGGCCATCATAACGGTGTCATACACAAATGCAAGCATTGTGGTGAAGAATACAcTCATATATCAACGTACTACACACATCTCCGCACGTCGCACCGCAACGCGCACGCGTGTAAAATATGCGGCGCGACTTTTGTTAGCCAAGCGGGTGTCGTCGTCCATATGAAGAGAAAGCATGTGATGCACACGCAAAACACTGAGGAGCCATCAACTAATATCTACTGTCAGAAATGCGACGTGTCATTCGTCTCTCAGAGCGCGTACGACGAACATCTATCGCAGTCCAAACAACATGAGGAAGAAAATAAggaatTCAAACGCACCCGGCGAAAACGACGGGAAATCCTTGCGAACGCGTCCAGATGCATTCATTGTAACAAAAAGTTCAAATCCAAAACGGAAGTGAAGACCCACATAGCTGAGGAACATCCGGGGCAGAATAAAGTCGAAAGAGTTGTTTGCGAGATTTGCGGAGCTGTGCTCTCGtcCGCATACATTGAAATTCATATGAACAGGCATACACGGAAAAAGGTCTACCCTTGTCAGACTTGTGGGAAGGAGTTCTTATGTGCGACAAGTCATAATACCCATCAATTGACTCACAGTGGCGAAAAACCTCACCCGTGCCCAATTTGCCCGAAACGATTCGGCCTTAAGGGGCATATGGAGGTACACTACAAACGCGTGCATCTGAAGGAACCCTATCCGAAAAGCGTGCAAAAACCGAAGCTGACCGATTGCCCGGTCTGTCACAAAACGTTCCAATCGAGGTCTCACATGGACACGCATCTCAGGAGAGTGCATTTAAAGGAACCTTACCCTAAAAGTGGTCCAAAGCTCTGTCCGATCTGCAGCAAACCGTTCGCATATGCTTCAGACATGGACATTCACTATAGGAGAGTGCATTTAAAAGAGCCTTACCCTAAAAGAACCTACAACAGAAAGAATAGGAATCGTCAGCCAAGTGAACTAGAAGTGCCCTTATACGCGTCGCTTCCAAAATGA
- Protein Sequence
- MSELKLCRICLNKDVKLFEPKQYNLQHYYEEIMRSKILSKDELPQYFCFECAALLQKYHKFKEKCDYGQNTLKKLMCSGFMTYYVIDDIRKNRSDLQSLTDYINHASNKRIKTINLKYKVEVEPLEMENVIVNSLPDNEEDFKYEYIPESDHDNDFTDVTKEEDNKTEYPEITKTDVDTADSDLKTYTVLTKPDFTKKTPVFTETNPVPTETIPVYTKSESILLKTENSPNKIDTGLKNLLFESDLDDSSNDVSFNMDLDVDTVKIKVANDSKITTSNKASSKNAIERRKKDTKKKDDKKYELSKAKQDADSKHRFVGIIREPKGELSKGNWDTKLLTEEEAMDQFKKREFDSKYERMEFKCTKCFKGFSKNDMLLRHNKMWHDQGENECRFCHMQFKWKSKLQIHMMNHYYIYKCLRCGLQFYLKNGAVFHDGHHNGVIHKCKHCGEEYTHISTYYTHLRTSHRNAHACKICGATFVSQAGVVVHMKRKHVMHTQNTEEPSTNIYCQKCDVSFVSQSAYDEHLSQSKQHEEENKEFKRTRRKRREILANASRCIHCNKKFKSKTEVKTHIAEEHPGQNKVERVVCEICGAVLSSAYIEIHMNRHTRKKVYPCQTCGKEFLCATSHNTHQLTHSGEKPHPCPICPKRFGLKGHMEVHYKRVHLKEPYPKSVQKPKLTDCPVCHKTFQSRSHMDTHLRRVHLKEPYPKSGPKLCPICSKPFAYASDMDIHYRRVHLKEPYPKRTYNRKNRNRQPSELEVPLYASLPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01171031;
- 90% Identity
- -
- 80% Identity
- -